miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29792 5' -53.3 NC_006273.1 + 102883 0.67 0.979323
Target:  5'- uUCGGCGUCGGgCGGC--GGCGguaacacacGGCGa -3'
miRNA:   3'- cAGUUGCAGUCaGCCGuaUCGC---------UCGC- -5'
29792 5' -53.3 NC_006273.1 + 113317 0.72 0.84169
Target:  5'- aGUCGACGUCugcuGGUCGGCA-AGCuGGGUc -3'
miRNA:   3'- -CAGUUGCAG----UCAGCCGUaUCG-CUCGc -5'
29792 5' -53.3 NC_006273.1 + 113567 0.66 0.989705
Target:  5'- aUCAACGUgCAccacuacccGUCGGCGgc-CGAGCGc -3'
miRNA:   3'- cAGUUGCA-GU---------CAGCCGUaucGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 114447 0.71 0.89952
Target:  5'- cGUCAcCGgCGG-CGGCGccaUGGCGAGCGc -3'
miRNA:   3'- -CAGUuGCaGUCaGCCGU---AUCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 114513 0.67 0.977024
Target:  5'- cUCGGCGaCGG-CGuGCAcGGCGGGCGu -3'
miRNA:   3'- cAGUUGCaGUCaGC-CGUaUCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 115080 0.69 0.95546
Target:  5'- gGUCAuuucguACGUCGGUUggugcaGGCGUugaAGCGGGCu -3'
miRNA:   3'- -CAGU------UGCAGUCAG------CCGUA---UCGCUCGc -5'
29792 5' -53.3 NC_006273.1 + 115453 0.71 0.87872
Target:  5'- cGUCAgguucacACGUCGuuagccagcGUCGGCAUAugaagggcGCGGGCGg -3'
miRNA:   3'- -CAGU-------UGCAGU---------CAGCCGUAU--------CGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 116864 0.7 0.905768
Target:  5'- -gCAGCGUgGGUCGGCGUcGCG-GUa -3'
miRNA:   3'- caGUUGCAgUCAGCCGUAuCGCuCGc -5'
29792 5' -53.3 NC_006273.1 + 119721 0.74 0.762682
Target:  5'- -cCAGCGUCAG-CGGgAUGGCGccGGCGc -3'
miRNA:   3'- caGUUGCAGUCaGCCgUAUCGC--UCGC- -5'
29792 5' -53.3 NC_006273.1 + 124114 0.66 0.992056
Target:  5'- -gCGGCGUCgacagAGcUCGGCGUuGGCG-GCGg -3'
miRNA:   3'- caGUUGCAG-----UC-AGCCGUA-UCGCuCGC- -5'
29792 5' -53.3 NC_006273.1 + 125249 0.72 0.825244
Target:  5'- -aCAACGUCugcaccGGgcgCGGCGUcagAGCGAGCGu -3'
miRNA:   3'- caGUUGCAG------UCa--GCCGUA---UCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 131256 0.67 0.983402
Target:  5'- aUCGccGCGUCGGgucUCGGCGU-GCGcGCGc -3'
miRNA:   3'- cAGU--UGCAGUC---AGCCGUAuCGCuCGC- -5'
29792 5' -53.3 NC_006273.1 + 133597 0.67 0.983402
Target:  5'- -cCGGCGUCAGUcgcCGGCAccUGGUG-GCu -3'
miRNA:   3'- caGUUGCAGUCA---GCCGU--AUCGCuCGc -5'
29792 5' -53.3 NC_006273.1 + 143226 0.73 0.79035
Target:  5'- -aCGACGUUuuGUCGGCGgAGCGcAGCGa -3'
miRNA:   3'- caGUUGCAGu-CAGCCGUaUCGC-UCGC- -5'
29792 5' -53.3 NC_006273.1 + 143629 0.67 0.974543
Target:  5'- -cCGACGUUAGUUGGC--GGUGAcGCa -3'
miRNA:   3'- caGUUGCAGUCAGCCGuaUCGCU-CGc -5'
29792 5' -53.3 NC_006273.1 + 145020 0.67 0.977024
Target:  5'- -cCAGuCGUCGGcgCGGCAUcccAGCGccGGCGg -3'
miRNA:   3'- caGUU-GCAGUCa-GCCGUA---UCGC--UCGC- -5'
29792 5' -53.3 NC_006273.1 + 147418 0.66 0.99094
Target:  5'- --uGGCGUCGGcgCGGCGUccGGCGucggggguGGCGg -3'
miRNA:   3'- cagUUGCAGUCa-GCCGUA--UCGC--------UCGC- -5'
29792 5' -53.3 NC_006273.1 + 148081 1.1 0.006835
Target:  5'- cGUCAACGUCAGUCGGCAUAGCGAGCGg -3'
miRNA:   3'- -CAGUUGCAGUCAGCCGUAUCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 148581 0.68 0.971594
Target:  5'- uUCAGCGUCAGUCuGGCcacacucaacgacauCGAGCGc -3'
miRNA:   3'- cAGUUGCAGUCAG-CCGuauc-----------GCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 155573 0.72 0.825244
Target:  5'- uUCAGCGUCGGcucCGGCAgUAGUG-GCGg -3'
miRNA:   3'- cAGUUGCAGUCa--GCCGU-AUCGCuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.