Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 234997 | 0.66 | 0.99195 |
Target: 5'- uGUCGGgGUguGUUGGCcgGgugugucGCGGGCGu -3' miRNA: 3'- -CAGUUgCAguCAGCCGuaU-------CGCUCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 234952 | 0.66 | 0.99195 |
Target: 5'- uGUCGGgGUguGUUGGCcgGgugugucGCGGGCGu -3' miRNA: 3'- -CAGUUgCAguCAGCCGuaU-------CGCUCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 234854 | 0.66 | 0.992056 |
Target: 5'- gGUCGGgGUguGUCGGgGgcGCG-GCGg -3' miRNA: 3'- -CAGUUgCAguCAGCCgUauCGCuCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 232750 | 0.66 | 0.992056 |
Target: 5'- uUgAGCGUCGGcgCGGCGUcuGGCGucuuGCa -3' miRNA: 3'- cAgUUGCAGUCa-GCCGUA--UCGCu---CGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 220791 | 0.66 | 0.992056 |
Target: 5'- -aCGGCGUCAG-CGGCuc-GCG-GCa -3' miRNA: 3'- caGUUGCAGUCaGCCGuauCGCuCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 218867 | 0.67 | 0.981447 |
Target: 5'- uUCAACGUU--UUGGCAUGGCGuccaGGUGu -3' miRNA: 3'- cAGUUGCAGucAGCCGUAUCGC----UCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 217933 | 0.7 | 0.917571 |
Target: 5'- uUCAACGUUAccggCGGCGUAGUGGaccGCGg -3' miRNA: 3'- cAGUUGCAGUca--GCCGUAUCGCU---CGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 214369 | 0.69 | 0.942988 |
Target: 5'- aUCGGCGUCGcUUaGCAgAGCGAGCGu -3' miRNA: 3'- cAGUUGCAGUcAGcCGUaUCGCUCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 208188 | 0.66 | 0.989705 |
Target: 5'- -aCGACGUCAGgggauucaCGGUAUuuagccaugcAGCGuGCGg -3' miRNA: 3'- caGUUGCAGUCa-------GCCGUA----------UCGCuCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 202553 | 0.66 | 0.986842 |
Target: 5'- -gCAGCGU-GGcCGGCGUGGCG-GCc -3' miRNA: 3'- caGUUGCAgUCaGCCGUAUCGCuCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 200271 | 0.66 | 0.989574 |
Target: 5'- -aCGACGUCAGcgaguacguguuuUCGGguCGUAGCGuGCu -3' miRNA: 3'- caGUUGCAGUC-------------AGCC--GUAUCGCuCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 195059 | 0.66 | 0.99195 |
Target: 5'- uGUCGGgGUguGUUGGCcgGgugugucGCGGGCGu -3' miRNA: 3'- -CAGUUgCAguCAGCCGuaU-------CGCUCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 195014 | 0.66 | 0.99195 |
Target: 5'- uGUCGGgGUguGUUGGCcgGgugugucGCGGGCGu -3' miRNA: 3'- -CAGUUgCAguCAGCCGuaU-------CGCUCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 194916 | 0.66 | 0.992056 |
Target: 5'- gGUCGGgGUguGUCGGgGgcGCG-GCGg -3' miRNA: 3'- -CAGUUgCAguCAGCCgUauCGCuCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 189947 | 0.66 | 0.985198 |
Target: 5'- cGUCugcagcuCGUCGGcCGGCGUgGGCGGcucGCGg -3' miRNA: 3'- -CAGuu-----GCAGUCaGCCGUA-UCGCU---CGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 188773 | 0.68 | 0.971872 |
Target: 5'- -gCAGCGU-GGUCGGCuccgucGGCGuGCGg -3' miRNA: 3'- caGUUGCAgUCAGCCGua----UCGCuCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 185294 | 0.68 | 0.959168 |
Target: 5'- cUCaAACGUCGGgcCGGCGUGGUG-GUGa -3' miRNA: 3'- cAG-UUGCAGUCa-GCCGUAUCGCuCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 179424 | 0.67 | 0.979323 |
Target: 5'- cGUC-GCGUCAG-CGGCAcGGUGcuGCGu -3' miRNA: 3'- -CAGuUGCAGUCaGCCGUaUCGCu-CGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 167216 | 0.68 | 0.959168 |
Target: 5'- -aCAGCGUCAG-CGGCcgGUGGUG-GCu -3' miRNA: 3'- caGUUGCAGUCaGCCG--UAUCGCuCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 155573 | 0.72 | 0.825244 |
Target: 5'- uUCAGCGUCGGcucCGGCAgUAGUG-GCGg -3' miRNA: 3'- cAGUUGCAGUCa--GCCGU-AUCGCuCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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