miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29792 5' -53.3 NC_006273.1 + 57751 0.66 0.987906
Target:  5'- -aCAGCGUgcaAGUCucgacuaaggagcgGGCGcgAGCGAGCGa -3'
miRNA:   3'- caGUUGCAg--UCAG--------------CCGUa-UCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 32659 0.68 0.962659
Target:  5'- cGUCGGCGUCGcGUCG-CAggccCGAGCGg -3'
miRNA:   3'- -CAGUUGCAGU-CAGCcGUauc-GCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 30644 0.68 0.965297
Target:  5'- aUCGuCGUCGcGUCGGCAaccgcagaucgcAGCGGGCGc -3'
miRNA:   3'- cAGUuGCAGU-CAGCCGUa-----------UCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 188773 0.68 0.971872
Target:  5'- -gCAGCGU-GGUCGGCuccgucGGCGuGCGg -3'
miRNA:   3'- caGUUGCAgUCAGCCGua----UCGCuCGC- -5'
29792 5' -53.3 NC_006273.1 + 41567 0.67 0.979101
Target:  5'- cGUCAACGUCGGUUGcucgaacuuguacGCGgUGGUGAcggGCGg -3'
miRNA:   3'- -CAGUUGCAGUCAGC-------------CGU-AUCGCU---CGC- -5'
29792 5' -53.3 NC_006273.1 + 218867 0.67 0.981447
Target:  5'- uUCAACGUU--UUGGCAUGGCGuccaGGUGu -3'
miRNA:   3'- cAGUUGCAGucAGCCGUAUCGC----UCGC- -5'
29792 5' -53.3 NC_006273.1 + 54535 0.67 0.983214
Target:  5'- uGUCGACG-UAGcCGGCGgugcuguUGGCGGuGCGg -3'
miRNA:   3'- -CAGUUGCaGUCaGCCGU-------AUCGCU-CGC- -5'
29792 5' -53.3 NC_006273.1 + 133597 0.67 0.983402
Target:  5'- -cCGGCGUCAGUcgcCGGCAccUGGUG-GCu -3'
miRNA:   3'- caGUUGCAGUCA---GCCGU--AUCGCuCGc -5'
29792 5' -53.3 NC_006273.1 + 131256 0.67 0.983402
Target:  5'- aUCGccGCGUCGGgucUCGGCGU-GCGcGCGc -3'
miRNA:   3'- cAGU--UGCAGUC---AGCCGUAuCGCuCGC- -5'
29792 5' -53.3 NC_006273.1 + 167216 0.68 0.959168
Target:  5'- -aCAGCGUCAG-CGGCcgGUGGUG-GCu -3'
miRNA:   3'- caGUUGCAGUCaGCCG--UAUCGCuCGc -5'
29792 5' -53.3 NC_006273.1 + 100276 0.68 0.959168
Target:  5'- -gCAACG-CGcGaCGGCGUAGCGAGaCGg -3'
miRNA:   3'- caGUUGCaGU-CaGCCGUAUCGCUC-GC- -5'
29792 5' -53.3 NC_006273.1 + 185294 0.68 0.959168
Target:  5'- cUCaAACGUCGGgcCGGCGUGGUG-GUGa -3'
miRNA:   3'- cAG-UUGCAGUCa-GCCGUAUCGCuCGC- -5'
29792 5' -53.3 NC_006273.1 + 119721 0.74 0.762682
Target:  5'- -cCAGCGUCAG-CGGgAUGGCGccGGCGc -3'
miRNA:   3'- caGUUGCAGUCaGCCgUAUCGC--UCGC- -5'
29792 5' -53.3 NC_006273.1 + 125249 0.72 0.825244
Target:  5'- -aCAACGUCugcaccGGgcgCGGCGUcagAGCGAGCGu -3'
miRNA:   3'- caGUUGCAG------UCa--GCCGUA---UCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 113317 0.72 0.84169
Target:  5'- aGUCGACGUCugcuGGUCGGCA-AGCuGGGUc -3'
miRNA:   3'- -CAGUUGCAG----UCAGCCGUaUCG-CUCGc -5'
29792 5' -53.3 NC_006273.1 + 115453 0.71 0.87872
Target:  5'- cGUCAgguucacACGUCGuuagccagcGUCGGCAUAugaagggcGCGGGCGg -3'
miRNA:   3'- -CAGU-------UGCAGU---------CAGCCGUAU--------CGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 39833 0.71 0.886344
Target:  5'- cUCAGCGUguGgcgCGGC--GGCGAGCc -3'
miRNA:   3'- cAGUUGCAguCa--GCCGuaUCGCUCGc -5'
29792 5' -53.3 NC_006273.1 + 116864 0.7 0.905768
Target:  5'- -gCAGCGUgGGUCGGCGUcGCG-GUa -3'
miRNA:   3'- caGUUGCAgUCAGCCGUAuCGCuCGc -5'
29792 5' -53.3 NC_006273.1 + 214369 0.69 0.942988
Target:  5'- aUCGGCGUCGcUUaGCAgAGCGAGCGu -3'
miRNA:   3'- cAGUUGCAGUcAGcCGUaUCGCUCGC- -5'
29792 5' -53.3 NC_006273.1 + 115080 0.69 0.95546
Target:  5'- gGUCAuuucguACGUCGGUUggugcaGGCGUugaAGCGGGCu -3'
miRNA:   3'- -CAGU------UGCAGUCAG------CCGUA---UCGCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.