Results 1 - 20 of 59 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 148081 | 1.1 | 0.006835 |
Target: 5'- cGUCAACGUCAGUCGGCAUAGCGAGCGg -3' miRNA: 3'- -CAGUUGCAGUCAGCCGUAUCGCUCGC- -5' |
|||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 189947 | 0.66 | 0.985198 |
Target: 5'- cGUCugcagcuCGUCGGcCGGCGUgGGCGGcucGCGg -3' miRNA: 3'- -CAGuu-----GCAGUCaGCCGUA-UCGCU---CGC- -5' |
|||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 202553 | 0.66 | 0.986842 |
Target: 5'- -gCAGCGU-GGcCGGCGUGGCG-GCc -3' miRNA: 3'- caGUUGCAgUCaGCCGUAUCGCuCGc -5' |
|||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 234854 | 0.66 | 0.992056 |
Target: 5'- gGUCGGgGUguGUCGGgGgcGCG-GCGg -3' miRNA: 3'- -CAGUUgCAguCAGCCgUauCGCuCGC- -5' |
|||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 98102 | 0.71 | 0.886344 |
Target: 5'- cGUCAGCGUaccaAGUCcGUucGGCGGGCGg -3' miRNA: 3'- -CAGUUGCAg---UCAGcCGuaUCGCUCGC- -5' |
|||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 43214 | 0.71 | 0.893044 |
Target: 5'- -aCGACGUCGcGaUCGGCA-GGCGGGCc -3' miRNA: 3'- caGUUGCAGU-C-AGCCGUaUCGCUCGc -5' |
|||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 87979 | 0.7 | 0.905768 |
Target: 5'- uGUCAACGUCAG-CGuGCAucUAGUgcuGAGCa -3' miRNA: 3'- -CAGUUGCAGUCaGC-CGU--AUCG---CUCGc -5' |
|||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 217933 | 0.7 | 0.917571 |
Target: 5'- uUCAACGUUAccggCGGCGUAGUGGaccGCGg -3' miRNA: 3'- cAGUUGCAGUca--GCCGUAUCGCU---CGC- -5' |
|||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 143629 | 0.67 | 0.974543 |
Target: 5'- -cCGACGUUAGUUGGC--GGUGAcGCa -3' miRNA: 3'- caGUUGCAGUCAGCCGuaUCGCU-CGc -5' |
|||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 70812 | 0.67 | 0.981447 |
Target: 5'- -gCAGCGcCAGcggccuggccuUCGGCAcgcUGGCGGGCc -3' miRNA: 3'- caGUUGCaGUC-----------AGCCGU---AUCGCUCGc -5' |
|||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 145020 | 0.67 | 0.977024 |
Target: 5'- -cCAGuCGUCGGcgCGGCAUcccAGCGccGGCGg -3' miRNA: 3'- caGUU-GCAGUCa-GCCGUA---UCGC--UCGC- -5' |
|||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 148581 | 0.68 | 0.971594 |
Target: 5'- uUCAGCGUCAGUCuGGCcacacucaacgacauCGAGCGc -3' miRNA: 3'- cAGUUGCAGUCAG-CCGuauc-----------GCUCGC- -5' |
|||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 95182 | 0.75 | 0.714418 |
Target: 5'- uGUCGACGUagaaaAGaCGGCGUGGCG-GCGu -3' miRNA: 3'- -CAGUUGCAg----UCaGCCGUAUCGCuCGC- -5' |
|||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 102883 | 0.67 | 0.979323 |
Target: 5'- uUCGGCGUCGGgCGGC--GGCGguaacacacGGCGa -3' miRNA: 3'- cAGUUGCAGUCaGCCGuaUCGC---------UCGC- -5' |
|||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 143226 | 0.73 | 0.79035 |
Target: 5'- -aCGACGUUuuGUCGGCGgAGCGcAGCGa -3' miRNA: 3'- caGUUGCAGu-CAGCCGUaUCGC-UCGC- -5' |
|||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 90470 | 0.7 | 0.92844 |
Target: 5'- -gCAGCGguUCGGgCGGCuugAGCGGGCGc -3' miRNA: 3'- caGUUGC--AGUCaGCCGua-UCGCUCGC- -5' |
|||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 179424 | 0.67 | 0.979323 |
Target: 5'- cGUC-GCGUCAG-CGGCAcGGUGcuGCGu -3' miRNA: 3'- -CAGuUGCAGUCaGCCGUaUCGCu-CGC- -5' |
|||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 64085 | 0.66 | 0.985198 |
Target: 5'- aUCAGag-CAG-CGGCGgGGCGAGCa -3' miRNA: 3'- cAGUUgcaGUCaGCCGUaUCGCUCGc -5' |
|||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 155573 | 0.72 | 0.825244 |
Target: 5'- uUCAGCGUCGGcucCGGCAgUAGUG-GCGg -3' miRNA: 3'- cAGUUGCAGUCa--GCCGU-AUCGCuCGC- -5' |
|||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 114447 | 0.71 | 0.89952 |
Target: 5'- cGUCAcCGgCGG-CGGCGccaUGGCGAGCGc -3' miRNA: 3'- -CAGUuGCaGUCaGCCGU---AUCGCUCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home