Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29792 | 5' | -53.3 | NC_006273.1 | + | 147418 | 0.66 | 0.99094 |
Target: 5'- --uGGCGUCGGcgCGGCGUccGGCGucggggguGGCGg -3' miRNA: 3'- cagUUGCAGUCa-GCCGUA--UCGC--------UCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 200271 | 0.66 | 0.989574 |
Target: 5'- -aCGACGUCAGcgaguacguguuuUCGGguCGUAGCGuGCu -3' miRNA: 3'- caGUUGCAGUC-------------AGCC--GUAUCGCuCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 189947 | 0.66 | 0.985198 |
Target: 5'- cGUCugcagcuCGUCGGcCGGCGUgGGCGGcucGCGg -3' miRNA: 3'- -CAGuu-----GCAGUCaGCCGUA-UCGCU---CGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 234854 | 0.66 | 0.992056 |
Target: 5'- gGUCGGgGUguGUCGGgGgcGCG-GCGg -3' miRNA: 3'- -CAGUUgCAguCAGCCgUauCGCuCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 113567 | 0.66 | 0.989705 |
Target: 5'- aUCAACGUgCAccacuacccGUCGGCGgc-CGAGCGc -3' miRNA: 3'- cAGUUGCA-GU---------CAGCCGUaucGCUCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 70812 | 0.67 | 0.981447 |
Target: 5'- -gCAGCGcCAGcggccuggccuUCGGCAcgcUGGCGGGCc -3' miRNA: 3'- caGUUGCaGUC-----------AGCCGU---AUCGCUCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 93117 | 0.66 | 0.992056 |
Target: 5'- -aCGACGUCGGcacagCGGgGU-GCGGGCc -3' miRNA: 3'- caGUUGCAGUCa----GCCgUAuCGCUCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 179424 | 0.67 | 0.979323 |
Target: 5'- cGUC-GCGUCAG-CGGCAcGGUGcuGCGu -3' miRNA: 3'- -CAGuUGCAGUCaGCCGUaUCGCu-CGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 234952 | 0.66 | 0.99195 |
Target: 5'- uGUCGGgGUguGUUGGCcgGgugugucGCGGGCGu -3' miRNA: 3'- -CAGUUgCAguCAGCCGuaU-------CGCUCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 102883 | 0.67 | 0.979323 |
Target: 5'- uUCGGCGUCGGgCGGC--GGCGguaacacacGGCGa -3' miRNA: 3'- cAGUUGCAGUCaGCCGuaUCGC---------UCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 202553 | 0.66 | 0.986842 |
Target: 5'- -gCAGCGU-GGcCGGCGUGGCG-GCc -3' miRNA: 3'- caGUUGCAgUCaGCCGUAUCGCuCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 64085 | 0.66 | 0.985198 |
Target: 5'- aUCAGag-CAG-CGGCGgGGCGAGCa -3' miRNA: 3'- cAGUUgcaGUCaGCCGUaUCGCUCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 188773 | 0.68 | 0.971872 |
Target: 5'- -gCAGCGU-GGUCGGCuccgucGGCGuGCGg -3' miRNA: 3'- caGUUGCAgUCAGCCGua----UCGCuCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 124114 | 0.66 | 0.992056 |
Target: 5'- -gCGGCGUCgacagAGcUCGGCGUuGGCG-GCGg -3' miRNA: 3'- caGUUGCAG-----UC-AGCCGUA-UCGCuCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 194916 | 0.66 | 0.992056 |
Target: 5'- gGUCGGgGUguGUCGGgGgcGCG-GCGg -3' miRNA: 3'- -CAGUUgCAguCAGCCgUauCGCuCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 116864 | 0.7 | 0.905768 |
Target: 5'- -gCAGCGUgGGUCGGCGUcGCG-GUa -3' miRNA: 3'- caGUUGCAgUCAGCCGUAuCGCuCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 220791 | 0.66 | 0.992056 |
Target: 5'- -aCGGCGUCAG-CGGCuc-GCG-GCa -3' miRNA: 3'- caGUUGCAGUCaGCCGuauCGCuCGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 232750 | 0.66 | 0.992056 |
Target: 5'- uUgAGCGUCGGcgCGGCGUcuGGCGucuuGCa -3' miRNA: 3'- cAgUUGCAGUCa-GCCGUA--UCGCu---CGc -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 30644 | 0.68 | 0.965297 |
Target: 5'- aUCGuCGUCGcGUCGGCAaccgcagaucgcAGCGGGCGc -3' miRNA: 3'- cAGUuGCAGU-CAGCCGUa-----------UCGCUCGC- -5' |
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29792 | 5' | -53.3 | NC_006273.1 | + | 32659 | 0.68 | 0.962659 |
Target: 5'- cGUCGGCGUCGcGUCG-CAggccCGAGCGg -3' miRNA: 3'- -CAGUUGCAGU-CAGCcGUauc-GCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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