miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 3' -54 NC_006273.1 + 55749 0.66 0.981683
Target:  5'- uACAGCAcgGugAGCCCCGGcaAGGa--- -3'
miRNA:   3'- -UGUCGUcgUugUCGGGGCU--UCCaauc -5'
29794 3' -54 NC_006273.1 + 233443 0.66 0.981683
Target:  5'- cACGGCGGCcgUGGCCuCCGAguaaaaaaaccAGGUg-- -3'
miRNA:   3'- -UGUCGUCGuuGUCGG-GGCU-----------UCCAauc -5'
29794 3' -54 NC_006273.1 + 89293 0.66 0.981683
Target:  5'- -aGGCGGCgGGCuuuuuuGUCCCGggGGUgGGu -3'
miRNA:   3'- ugUCGUCG-UUGu-----CGGGGCuuCCAaUC- -5'
29794 3' -54 NC_006273.1 + 30831 0.66 0.981683
Target:  5'- aACAGUAGCAGaaguacCAGUCCCGuggcgccAGGUg-- -3'
miRNA:   3'- -UGUCGUCGUU------GUCGGGGCu------UCCAauc -5'
29794 3' -54 NC_006273.1 + 149440 0.66 0.981683
Target:  5'- uACGGCAaCGGCGGCgCCGguGGUa-- -3'
miRNA:   3'- -UGUCGUcGUUGUCGgGGCuuCCAauc -5'
29794 3' -54 NC_006273.1 + 195825 0.66 0.981683
Target:  5'- cGCGGCcgcggGGCcgGAgGGCCuUCGggGGUUGGu -3'
miRNA:   3'- -UGUCG-----UCG--UUgUCGG-GGCuuCCAAUC- -5'
29794 3' -54 NC_006273.1 + 933 0.66 0.981683
Target:  5'- cGCGGCcgcggGGCcgGAgGGCCuUCGggGGUUGGu -3'
miRNA:   3'- -UGUCG-----UCG--UUgUCGG-GGCuuCCAAUC- -5'
29794 3' -54 NC_006273.1 + 113698 0.66 0.981478
Target:  5'- cGCAGCGGCugggaucccucacGucgcgaggACAGCgCCGGAGGUg-- -3'
miRNA:   3'- -UGUCGUCG-------------U--------UGUCGgGGCUUCCAauc -5'
29794 3' -54 NC_006273.1 + 197045 0.66 0.97956
Target:  5'- -gAGCGGCAGCGGCgaCGAcGGUg-- -3'
miRNA:   3'- ugUCGUCGUUGUCGggGCUuCCAauc -5'
29794 3' -54 NC_006273.1 + 71884 0.66 0.97702
Target:  5'- uGCGGCGGCAACgggcgcgacaccGGCgacggaaCCUGAGGGUa-- -3'
miRNA:   3'- -UGUCGUCGUUG------------UCG-------GGGCUUCCAauc -5'
29794 3' -54 NC_006273.1 + 219719 0.66 0.974774
Target:  5'- aACAGCAGCAucGCAacGCCCCagcugccauAGGUg-- -3'
miRNA:   3'- -UGUCGUCGU--UGU--CGGGGcu-------UCCAauc -5'
29794 3' -54 NC_006273.1 + 84850 0.66 0.974774
Target:  5'- gACGGCcGCGGCGGCCgUcAGGGUggAGg -3'
miRNA:   3'- -UGUCGuCGUUGUCGGgGcUUCCAa-UC- -5'
29794 3' -54 NC_006273.1 + 20403 0.66 0.974774
Target:  5'- cACAGCAGCGGCGucGCCCCa-------- -3'
miRNA:   3'- -UGUCGUCGUUGU--CGGGGcuuccaauc -5'
29794 3' -54 NC_006273.1 + 193277 0.66 0.972097
Target:  5'- aACAGCAGCugaaGGCUUgGGAGGagAGg -3'
miRNA:   3'- -UGUCGUCGuug-UCGGGgCUUCCaaUC- -5'
29794 3' -54 NC_006273.1 + 39169 0.66 0.972097
Target:  5'- -gGGCuGCGGCGguGCUCCGAgcggcguugcgGGGUUGGa -3'
miRNA:   3'- ugUCGuCGUUGU--CGGGGCU-----------UCCAAUC- -5'
29794 3' -54 NC_006273.1 + 204105 0.66 0.971818
Target:  5'- --cGCGGCcGCAcGCCCCGAAcggcucuGGUUGu -3'
miRNA:   3'- uguCGUCGuUGU-CGGGGCUU-------CCAAUc -5'
29794 3' -54 NC_006273.1 + 99517 0.67 0.96922
Target:  5'- gGCGGCGGCGGCuGCUgCUGuuGGGUUGc -3'
miRNA:   3'- -UGUCGUCGUUGuCGG-GGCu-UCCAAUc -5'
29794 3' -54 NC_006273.1 + 118342 0.67 0.96922
Target:  5'- -aGGCGGCAACggccgGGCCCuCGAcggcAGGUUc- -3'
miRNA:   3'- ugUCGUCGUUG-----UCGGG-GCU----UCCAAuc -5'
29794 3' -54 NC_006273.1 + 94971 0.67 0.966138
Target:  5'- cGCGGCGGCucccucucGGCGGCUCC---GGUUGGg -3'
miRNA:   3'- -UGUCGUCG--------UUGUCGGGGcuuCCAAUC- -5'
29794 3' -54 NC_006273.1 + 38419 0.67 0.966138
Target:  5'- -uGGCGGCAACAGCgaCGAgcgAGGUg-- -3'
miRNA:   3'- ugUCGUCGUUGUCGggGCU---UCCAauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.