Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29794 | 3' | -54 | NC_006273.1 | + | 150490 | 0.67 | 0.959335 |
Target: 5'- --cGCGGUGGCAGCUUgGggGGUgAGg -3' miRNA: 3'- uguCGUCGUUGUCGGGgCuuCCAaUC- -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 148907 | 0.67 | 0.962845 |
Target: 5'- -aAGuCAGCAGCAGCaCCGgcGGUg-- -3' miRNA: 3'- ugUC-GUCGUUGUCGgGGCuuCCAauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 99517 | 0.67 | 0.96922 |
Target: 5'- gGCGGCGGCGGCuGCUgCUGuuGGGUUGc -3' miRNA: 3'- -UGUCGUCGUUGuCGG-GGCu-UCCAAUc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 42664 | 0.67 | 0.962845 |
Target: 5'- cACAcGCAGCAGCAGCCa--GAGGa--- -3' miRNA: 3'- -UGU-CGUCGUUGUCGGggcUUCCaauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 208245 | 0.67 | 0.962845 |
Target: 5'- gACGGCAGCGGCGgGUCCauGAGGcgGGu -3' miRNA: 3'- -UGUCGUCGUUGU-CGGGgcUUCCaaUC- -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 90788 | 0.67 | 0.951647 |
Target: 5'- -aAGCGccCAGCAGCCCCGAcgugGGGUcgaUAGc -3' miRNA: 3'- ugUCGUc-GUUGUCGGGGCU----UCCA---AUC- -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 149569 | 0.67 | 0.959336 |
Target: 5'- -uGGCGGCGGCcgGGCCCgUGGAGGa--- -3' miRNA: 3'- ugUCGUCGUUG--UCGGG-GCUUCCaauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 130592 | 0.67 | 0.959336 |
Target: 5'- -gAGCGGCAGCAGCUUCaGcAGGUg-- -3' miRNA: 3'- ugUCGUCGUUGUCGGGG-CuUCCAauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 188973 | 0.67 | 0.951647 |
Target: 5'- -gGGCAGUGGCGGgCCCGAuGGg--- -3' miRNA: 3'- ugUCGUCGUUGUCgGGGCUuCCaauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 215275 | 0.67 | 0.962845 |
Target: 5'- cCGGCuGCGAUGGUggaUCCGGAGGggGGa -3' miRNA: 3'- uGUCGuCGUUGUCG---GGGCUUCCaaUC- -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 135873 | 0.67 | 0.959336 |
Target: 5'- aACAGCAGCAGCcGCCgCCGccaccaccGGUa-- -3' miRNA: 3'- -UGUCGUCGUUGuCGG-GGCuu------CCAauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 7697 | 0.68 | 0.943041 |
Target: 5'- gGCGGCGGCGGCaguGGCCgCGGcagcGGGgaGGa -3' miRNA: 3'- -UGUCGUCGUUG---UCGGgGCU----UCCaaUC- -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 31942 | 0.68 | 0.933494 |
Target: 5'- gGCAGCAGUAGCucccaacGCCUCGuAGGcgAGu -3' miRNA: 3'- -UGUCGUCGUUGu------CGGGGCuUCCaaUC- -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 214161 | 0.69 | 0.899148 |
Target: 5'- uCAGCAGCGGCAGCCacagCGgcGGc--- -3' miRNA: 3'- uGUCGUCGUUGUCGGg---GCuuCCaauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 206251 | 0.69 | 0.905463 |
Target: 5'- -aGGCGGUAACGGCUCCGucuccaccAAGGgcGGa -3' miRNA: 3'- ugUCGUCGUUGUCGGGGC--------UUCCaaUC- -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 161692 | 0.69 | 0.917388 |
Target: 5'- uGCGGCGGCAcucgcuccACGGCCuCCGAcgAGcGUUGc -3' miRNA: 3'- -UGUCGUCGU--------UGUCGG-GGCU--UC-CAAUc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 203850 | 0.69 | 0.922996 |
Target: 5'- -aAGCAGCcggAGCAuGCCCCGguGGUUc- -3' miRNA: 3'- ugUCGUCG---UUGU-CGGGGCuuCCAAuc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 220343 | 0.69 | 0.905463 |
Target: 5'- -aGGCAGCucgGCAcGCCCCGggGcGUg-- -3' miRNA: 3'- ugUCGUCGu--UGU-CGGGGCuuC-CAauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 162784 | 0.69 | 0.917388 |
Target: 5'- gGCGGCGGCAGCGGCCgcaugucgcugCCGcuGGa--- -3' miRNA: 3'- -UGUCGUCGUUGUCGG-----------GGCuuCCaauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 138160 | 0.69 | 0.917388 |
Target: 5'- gGCGGCGGCcACGGCCUgCGGgcaggcGGGUUGc -3' miRNA: 3'- -UGUCGUCGuUGUCGGG-GCU------UCCAAUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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