Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29794 | 3' | -54 | NC_006273.1 | + | 147819 | 1.08 | 0.007247 |
Target: 5'- aACAGCAGCAACAGCCCCGAAGGUUAGc -3' miRNA: 3'- -UGUCGUCGUUGUCGGGGCUUCCAAUC- -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 149440 | 0.83 | 0.260328 |
Target: 5'- -gGGgGGCGACGGCCCCGAGGGcgAGg -3' miRNA: 3'- ugUCgUCGUUGUCGGGGCUUCCaaUC- -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 2184 | 0.82 | 0.306719 |
Target: 5'- gGCAGCAGCGGCGGCgCCGAcGGUg-- -3' miRNA: 3'- -UGUCGUCGUUGUCGgGGCUuCCAauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 197077 | 0.82 | 0.306719 |
Target: 5'- gGCAGCAGCGGCGGCgCCGAcGGUg-- -3' miRNA: 3'- -UGUCGUCGUUGUCGgGGCUuCCAauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 94885 | 0.78 | 0.472024 |
Target: 5'- gACGGCAGU--CGGUCCCGgAAGGUUGGg -3' miRNA: 3'- -UGUCGUCGuuGUCGGGGC-UUCCAAUC- -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 98211 | 0.76 | 0.569744 |
Target: 5'- aGCGGCAGCGGCGGCaCCCcggcucagacGAGGcGUUAGc -3' miRNA: 3'- -UGUCGUCGUUGUCG-GGG----------CUUC-CAAUC- -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 27813 | 0.76 | 0.569744 |
Target: 5'- gUAGCAGCAGCAGaUCCCaAGGGUUAa -3' miRNA: 3'- uGUCGUCGUUGUC-GGGGcUUCCAAUc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 152004 | 0.75 | 0.641034 |
Target: 5'- gGCGGCGGCAGCAGCccgacguggCCCGcGGGUc-- -3' miRNA: 3'- -UGUCGUCGUUGUCG---------GGGCuUCCAauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 105424 | 0.75 | 0.620586 |
Target: 5'- --uGCAGCAGCAGCCCC-AGGGa--- -3' miRNA: 3'- uguCGUCGUUGUCGGGGcUUCCaauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 33432 | 0.73 | 0.711942 |
Target: 5'- gGCGGCGcGCGACAGCCCCGgcGc---- -3' miRNA: 3'- -UGUCGU-CGUUGUCGGGGCuuCcaauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 167325 | 0.73 | 0.731726 |
Target: 5'- gGCGGCAGCGGCGGCCaCGgcGGc--- -3' miRNA: 3'- -UGUCGUCGUUGUCGGgGCuuCCaauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 132810 | 0.73 | 0.748274 |
Target: 5'- gGCGGCAGCAcCGGCCCCaGAcacguuauuuggccGGGUa-- -3' miRNA: 3'- -UGUCGUCGUuGUCGGGG-CU--------------UCCAauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 90265 | 0.72 | 0.779516 |
Target: 5'- gGCGGCGGCGaaucgcccggGCuGCCCCGcAGGUg-- -3' miRNA: 3'- -UGUCGUCGU----------UGuCGGGGCuUCCAauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 38077 | 0.72 | 0.788715 |
Target: 5'- gGCAGCAGCcgccgcGCGGCCUCGgcGGcgGGc -3' miRNA: 3'- -UGUCGUCGu-----UGUCGGGGCuuCCaaUC- -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 179895 | 0.72 | 0.797773 |
Target: 5'- aACAGCAagcGCAACAuGCUgCGcGGGUUAGg -3' miRNA: 3'- -UGUCGU---CGUUGU-CGGgGCuUCCAAUC- -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 232970 | 0.72 | 0.788715 |
Target: 5'- gGCAGCAGCcgccgcGCGGCCUCGgcGGcgGGc -3' miRNA: 3'- -UGUCGUCGu-----UGUCGGGGCuuCCaaUC- -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 4589 | 0.72 | 0.779516 |
Target: 5'- gGCAGCGGUggUGGCgCUGggGGUg-- -3' miRNA: 3'- -UGUCGUCGuuGUCGgGGCuuCCAauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 167181 | 0.72 | 0.770186 |
Target: 5'- cACGGCGggcGCAGCGGCCgCGGAGGc--- -3' miRNA: 3'- -UGUCGU---CGUUGUCGGgGCUUCCaauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 139562 | 0.72 | 0.779516 |
Target: 5'- gGCGGCGGCggUGGUgCgagCGGAGGUUAGg -3' miRNA: 3'- -UGUCGUCGuuGUCGgG---GCUUCCAAUC- -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 145786 | 0.71 | 0.824017 |
Target: 5'- gUAGUAGCGGCAGCCaCCGcGAGGc--- -3' miRNA: 3'- uGUCGUCGUUGUCGG-GGC-UUCCaauc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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