miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 3' -54 NC_006273.1 + 215275 0.67 0.962845
Target:  5'- cCGGCuGCGAUGGUggaUCCGGAGGggGGa -3'
miRNA:   3'- uGUCGuCGUUGUCG---GGGCUUCCaaUC- -5'
29794 3' -54 NC_006273.1 + 42664 0.67 0.962845
Target:  5'- cACAcGCAGCAGCAGCCa--GAGGa--- -3'
miRNA:   3'- -UGU-CGUCGUUGUCGGggcUUCCaauc -5'
29794 3' -54 NC_006273.1 + 208245 0.67 0.962845
Target:  5'- gACGGCAGCGGCGgGUCCauGAGGcgGGu -3'
miRNA:   3'- -UGUCGUCGUUGU-CGGGgcUUCCaaUC- -5'
29794 3' -54 NC_006273.1 + 148907 0.67 0.962845
Target:  5'- -aAGuCAGCAGCAGCaCCGgcGGUg-- -3'
miRNA:   3'- ugUC-GUCGUUGUCGgGGCuuCCAauc -5'
29794 3' -54 NC_006273.1 + 130592 0.67 0.959336
Target:  5'- -gAGCGGCAGCAGCUUCaGcAGGUg-- -3'
miRNA:   3'- ugUCGUCGUUGUCGGGG-CuUCCAauc -5'
29794 3' -54 NC_006273.1 + 135873 0.67 0.959336
Target:  5'- aACAGCAGCAGCcGCCgCCGccaccaccGGUa-- -3'
miRNA:   3'- -UGUCGUCGUUGuCGG-GGCuu------CCAauc -5'
29794 3' -54 NC_006273.1 + 149569 0.67 0.959336
Target:  5'- -uGGCGGCGGCcgGGCCCgUGGAGGa--- -3'
miRNA:   3'- ugUCGUCGUUG--UCGGG-GCUUCCaauc -5'
29794 3' -54 NC_006273.1 + 150490 0.67 0.959335
Target:  5'- --cGCGGUGGCAGCUUgGggGGUgAGg -3'
miRNA:   3'- uguCGUCGUUGUCGGGgCuuCCAaUC- -5'
29794 3' -54 NC_006273.1 + 38222 0.67 0.955604
Target:  5'- gACGGCGGaaaccGCGGCgCCGGAGGa--- -3'
miRNA:   3'- -UGUCGUCgu---UGUCGgGGCUUCCaauc -5'
29794 3' -54 NC_006273.1 + 90788 0.67 0.951647
Target:  5'- -aAGCGccCAGCAGCCCCGAcgugGGGUcgaUAGc -3'
miRNA:   3'- ugUCGUc-GUUGUCGGGGCU----UCCA---AUC- -5'
29794 3' -54 NC_006273.1 + 188973 0.67 0.951647
Target:  5'- -gGGCAGUGGCGGgCCCGAuGGg--- -3'
miRNA:   3'- ugUCGUCGUUGUCgGGGCUuCCaauc -5'
29794 3' -54 NC_006273.1 + 7697 0.68 0.943041
Target:  5'- gGCGGCGGCGGCaguGGCCgCGGcagcGGGgaGGa -3'
miRNA:   3'- -UGUCGUCGUUG---UCGGgGCU----UCCaaUC- -5'
29794 3' -54 NC_006273.1 + 31942 0.68 0.933494
Target:  5'- gGCAGCAGUAGCucccaacGCCUCGuAGGcgAGu -3'
miRNA:   3'- -UGUCGUCGUUGu------CGGGGCuUCCaaUC- -5'
29794 3' -54 NC_006273.1 + 92540 0.69 0.922996
Target:  5'- uGCAGCAGaCAGCAGCCCgUGGccGUg-- -3'
miRNA:   3'- -UGUCGUC-GUUGUCGGG-GCUucCAauc -5'
29794 3' -54 NC_006273.1 + 203850 0.69 0.922996
Target:  5'- -aAGCAGCcggAGCAuGCCCCGguGGUUc- -3'
miRNA:   3'- ugUCGUCG---UUGU-CGGGGCuuCCAAuc -5'
29794 3' -54 NC_006273.1 + 161692 0.69 0.917388
Target:  5'- uGCGGCGGCAcucgcuccACGGCCuCCGAcgAGcGUUGc -3'
miRNA:   3'- -UGUCGUCGU--------UGUCGG-GGCU--UC-CAAUc -5'
29794 3' -54 NC_006273.1 + 162784 0.69 0.917388
Target:  5'- gGCGGCGGCAGCGGCCgcaugucgcugCCGcuGGa--- -3'
miRNA:   3'- -UGUCGUCGUUGUCGG-----------GGCuuCCaauc -5'
29794 3' -54 NC_006273.1 + 138160 0.69 0.917388
Target:  5'- gGCGGCGGCcACGGCCUgCGGgcaggcGGGUUGc -3'
miRNA:   3'- -UGUCGUCGuUGUCGGG-GCU------UCCAAUc -5'
29794 3' -54 NC_006273.1 + 82053 0.69 0.910346
Target:  5'- aGCGGCAGCGGCGGCagaagaggagaCGGAGGa--- -3'
miRNA:   3'- -UGUCGUCGUUGUCGgg---------GCUUCCaauc -5'
29794 3' -54 NC_006273.1 + 206251 0.69 0.905463
Target:  5'- -aGGCGGUAACGGCUCCGucuccaccAAGGgcGGa -3'
miRNA:   3'- ugUCGUCGUUGUCGGGGC--------UUCCaaUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.