miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 3' -54 NC_006273.1 + 220343 0.69 0.905463
Target:  5'- -aGGCAGCucgGCAcGCCCCGggGcGUg-- -3'
miRNA:   3'- ugUCGUCGu--UGU-CGGGGCuuC-CAauc -5'
29794 3' -54 NC_006273.1 + 214161 0.69 0.899148
Target:  5'- uCAGCAGCGGCAGCCacagCGgcGGc--- -3'
miRNA:   3'- uGUCGUCGUUGUCGGg---GCuuCCaauc -5'
29794 3' -54 NC_006273.1 + 86543 0.69 0.899148
Target:  5'- aGCGGCGGCAACAGCCagcgacgaucgCCGccGGccGGu -3'
miRNA:   3'- -UGUCGUCGUUGUCGG-----------GGCuuCCaaUC- -5'
29794 3' -54 NC_006273.1 + 116993 0.69 0.898503
Target:  5'- gGCAGCAGCGGCGGCUaacacgacacuagCCGGgcAGGa--- -3'
miRNA:   3'- -UGUCGUCGUUGUCGG-------------GGCU--UCCaauc -5'
29794 3' -54 NC_006273.1 + 29825 0.7 0.892601
Target:  5'- -uGGUGGCGGCAGCCaCGGAGGa--- -3'
miRNA:   3'- ugUCGUCGUUGUCGGgGCUUCCaauc -5'
29794 3' -54 NC_006273.1 + 162256 0.7 0.885827
Target:  5'- gGCAGCGGCGggacucgcgACGGCCCuucugCGGAGGa--- -3'
miRNA:   3'- -UGUCGUCGU---------UGUCGGG-----GCUUCCaauc -5'
29794 3' -54 NC_006273.1 + 103030 0.7 0.878829
Target:  5'- cGCGGCGGCAGCGGCCgCGGc------ -3'
miRNA:   3'- -UGUCGUCGUUGUCGGgGCUuccaauc -5'
29794 3' -54 NC_006273.1 + 163077 0.7 0.856539
Target:  5'- gGCGGCGGCGACGGCggCGGcugcgGGGUUAa -3'
miRNA:   3'- -UGUCGUCGUUGUCGggGCU-----UCCAAUc -5'
29794 3' -54 NC_006273.1 + 81598 0.71 0.840656
Target:  5'- gGCGGCGGCcGCGGCCgCGgcGGa--- -3'
miRNA:   3'- -UGUCGUCGuUGUCGGgGCuuCCaauc -5'
29794 3' -54 NC_006273.1 + 56924 0.71 0.832428
Target:  5'- gGCGGCAGCAgcccguuugGCAGCgguuCCCGAcgAGGUUc- -3'
miRNA:   3'- -UGUCGUCGU---------UGUCG----GGGCU--UCCAAuc -5'
29794 3' -54 NC_006273.1 + 213586 0.71 0.832427
Target:  5'- gACGGUAGCcACAGCCgCCGGAGa---- -3'
miRNA:   3'- -UGUCGUCGuUGUCGG-GGCUUCcaauc -5'
29794 3' -54 NC_006273.1 + 102081 0.71 0.832427
Target:  5'- -gAGCAGCGGCGGCCacaCGcGGGUg-- -3'
miRNA:   3'- ugUCGUCGUUGUCGGg--GCuUCCAauc -5'
29794 3' -54 NC_006273.1 + 161796 0.71 0.824017
Target:  5'- gGCAGCGGCAGCGGCgggccaggacaUCgGAGGGUc-- -3'
miRNA:   3'- -UGUCGUCGUUGUCG-----------GGgCUUCCAauc -5'
29794 3' -54 NC_006273.1 + 36738 0.71 0.824017
Target:  5'- aGCGGCGGC-ACAGCucggCCCGAuGGUcGGg -3'
miRNA:   3'- -UGUCGUCGuUGUCG----GGGCUuCCAaUC- -5'
29794 3' -54 NC_006273.1 + 147679 0.71 0.824017
Target:  5'- aACAGCAGCAacagucGCAGCCCCc-GGGc--- -3'
miRNA:   3'- -UGUCGUCGU------UGUCGGGGcuUCCaauc -5'
29794 3' -54 NC_006273.1 + 41246 0.71 0.824017
Target:  5'- cGCGGCgcguggAGuCGACGGCCuCCGAGGGguggUGGa -3'
miRNA:   3'- -UGUCG------UC-GUUGUCGG-GGCUUCCa---AUC- -5'
29794 3' -54 NC_006273.1 + 164549 0.71 0.824017
Target:  5'- gGCGGCGGCGGuCGGCCcgccagcgugCCGAAGGccAGg -3'
miRNA:   3'- -UGUCGUCGUU-GUCGG----------GGCUUCCaaUC- -5'
29794 3' -54 NC_006273.1 + 145786 0.71 0.824017
Target:  5'- gUAGUAGCGGCAGCCaCCGcGAGGc--- -3'
miRNA:   3'- uGUCGUCGUUGUCGG-GGC-UUCCaauc -5'
29794 3' -54 NC_006273.1 + 147726 0.71 0.815433
Target:  5'- aACAGCAGCAacaGCAGCCaCCGAcacagcagcaccAGGc--- -3'
miRNA:   3'- -UGUCGUCGU---UGUCGG-GGCU------------UCCaauc -5'
29794 3' -54 NC_006273.1 + 148021 0.71 0.815433
Target:  5'- aGCGGCGGCAACAGCUUCGGGa----- -3'
miRNA:   3'- -UGUCGUCGUUGUCGGGGCUUccaauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.