miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 3' -54 NC_006273.1 + 933 0.66 0.981683
Target:  5'- cGCGGCcgcggGGCcgGAgGGCCuUCGggGGUUGGu -3'
miRNA:   3'- -UGUCG-----UCG--UUgUCGG-GGCuuCCAAUC- -5'
29794 3' -54 NC_006273.1 + 2184 0.82 0.306719
Target:  5'- gGCAGCAGCGGCGGCgCCGAcGGUg-- -3'
miRNA:   3'- -UGUCGUCGUUGUCGgGGCUuCCAauc -5'
29794 3' -54 NC_006273.1 + 4589 0.72 0.779516
Target:  5'- gGCAGCGGUggUGGCgCUGggGGUg-- -3'
miRNA:   3'- -UGUCGUCGuuGUCGgGGCuuCCAauc -5'
29794 3' -54 NC_006273.1 + 7697 0.68 0.943041
Target:  5'- gGCGGCGGCGGCaguGGCCgCGGcagcGGGgaGGa -3'
miRNA:   3'- -UGUCGUCGUUG---UCGGgGCU----UCCaaUC- -5'
29794 3' -54 NC_006273.1 + 20403 0.66 0.974774
Target:  5'- cACAGCAGCGGCGucGCCCCa-------- -3'
miRNA:   3'- -UGUCGUCGUUGU--CGGGGcuuccaauc -5'
29794 3' -54 NC_006273.1 + 27813 0.76 0.569744
Target:  5'- gUAGCAGCAGCAGaUCCCaAGGGUUAa -3'
miRNA:   3'- uGUCGUCGUUGUC-GGGGcUUCCAAUc -5'
29794 3' -54 NC_006273.1 + 29825 0.7 0.892601
Target:  5'- -uGGUGGCGGCAGCCaCGGAGGa--- -3'
miRNA:   3'- ugUCGUCGUUGUCGGgGCUUCCaauc -5'
29794 3' -54 NC_006273.1 + 30831 0.66 0.981683
Target:  5'- aACAGUAGCAGaaguacCAGUCCCGuggcgccAGGUg-- -3'
miRNA:   3'- -UGUCGUCGUU------GUCGGGGCu------UCCAauc -5'
29794 3' -54 NC_006273.1 + 31942 0.68 0.933494
Target:  5'- gGCAGCAGUAGCucccaacGCCUCGuAGGcgAGu -3'
miRNA:   3'- -UGUCGUCGUUGu------CGGGGCuUCCaaUC- -5'
29794 3' -54 NC_006273.1 + 33432 0.73 0.711942
Target:  5'- gGCGGCGcGCGACAGCCCCGgcGc---- -3'
miRNA:   3'- -UGUCGU-CGUUGUCGGGGCuuCcaauc -5'
29794 3' -54 NC_006273.1 + 36738 0.71 0.824017
Target:  5'- aGCGGCGGC-ACAGCucggCCCGAuGGUcGGg -3'
miRNA:   3'- -UGUCGUCGuUGUCG----GGGCUuCCAaUC- -5'
29794 3' -54 NC_006273.1 + 38077 0.72 0.788715
Target:  5'- gGCAGCAGCcgccgcGCGGCCUCGgcGGcgGGc -3'
miRNA:   3'- -UGUCGUCGu-----UGUCGGGGCuuCCaaUC- -5'
29794 3' -54 NC_006273.1 + 38222 0.67 0.955604
Target:  5'- gACGGCGGaaaccGCGGCgCCGGAGGa--- -3'
miRNA:   3'- -UGUCGUCgu---UGUCGgGGCUUCCaauc -5'
29794 3' -54 NC_006273.1 + 38419 0.67 0.966138
Target:  5'- -uGGCGGCAACAGCgaCGAgcgAGGUg-- -3'
miRNA:   3'- ugUCGUCGUUGUCGggGCU---UCCAauc -5'
29794 3' -54 NC_006273.1 + 39169 0.66 0.972097
Target:  5'- -gGGCuGCGGCGguGCUCCGAgcggcguugcgGGGUUGGa -3'
miRNA:   3'- ugUCGuCGUUGU--CGGGGCU-----------UCCAAUC- -5'
29794 3' -54 NC_006273.1 + 41246 0.71 0.824017
Target:  5'- cGCGGCgcguggAGuCGACGGCCuCCGAGGGguggUGGa -3'
miRNA:   3'- -UGUCG------UC-GUUGUCGG-GGCUUCCa---AUC- -5'
29794 3' -54 NC_006273.1 + 42664 0.67 0.962845
Target:  5'- cACAcGCAGCAGCAGCCa--GAGGa--- -3'
miRNA:   3'- -UGU-CGUCGUUGUCGGggcUUCCaauc -5'
29794 3' -54 NC_006273.1 + 55749 0.66 0.981683
Target:  5'- uACAGCAcgGugAGCCCCGGcaAGGa--- -3'
miRNA:   3'- -UGUCGUcgUugUCGGGGCU--UCCaauc -5'
29794 3' -54 NC_006273.1 + 56924 0.71 0.832428
Target:  5'- gGCGGCAGCAgcccguuugGCAGCgguuCCCGAcgAGGUUc- -3'
miRNA:   3'- -UGUCGUCGU---------UGUCG----GGGCU--UCCAAuc -5'
29794 3' -54 NC_006273.1 + 71884 0.66 0.97702
Target:  5'- uGCGGCGGCAACgggcgcgacaccGGCgacggaaCCUGAGGGUa-- -3'
miRNA:   3'- -UGUCGUCGUUG------------UCG-------GGGCUUCCAauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.