miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 3' -54 NC_006273.1 + 81598 0.71 0.840656
Target:  5'- gGCGGCGGCcGCGGCCgCGgcGGa--- -3'
miRNA:   3'- -UGUCGUCGuUGUCGGgGCuuCCaauc -5'
29794 3' -54 NC_006273.1 + 82053 0.69 0.910346
Target:  5'- aGCGGCAGCGGCGGCagaagaggagaCGGAGGa--- -3'
miRNA:   3'- -UGUCGUCGUUGUCGgg---------GCUUCCaauc -5'
29794 3' -54 NC_006273.1 + 84850 0.66 0.974774
Target:  5'- gACGGCcGCGGCGGCCgUcAGGGUggAGg -3'
miRNA:   3'- -UGUCGuCGUUGUCGGgGcUUCCAa-UC- -5'
29794 3' -54 NC_006273.1 + 86543 0.69 0.899148
Target:  5'- aGCGGCGGCAACAGCCagcgacgaucgCCGccGGccGGu -3'
miRNA:   3'- -UGUCGUCGUUGUCGG-----------GGCuuCCaaUC- -5'
29794 3' -54 NC_006273.1 + 89293 0.66 0.981683
Target:  5'- -aGGCGGCgGGCuuuuuuGUCCCGggGGUgGGu -3'
miRNA:   3'- ugUCGUCG-UUGu-----CGGGGCuuCCAaUC- -5'
29794 3' -54 NC_006273.1 + 90265 0.72 0.779516
Target:  5'- gGCGGCGGCGaaucgcccggGCuGCCCCGcAGGUg-- -3'
miRNA:   3'- -UGUCGUCGU----------UGuCGGGGCuUCCAauc -5'
29794 3' -54 NC_006273.1 + 90788 0.67 0.951647
Target:  5'- -aAGCGccCAGCAGCCCCGAcgugGGGUcgaUAGc -3'
miRNA:   3'- ugUCGUc-GUUGUCGGGGCU----UCCA---AUC- -5'
29794 3' -54 NC_006273.1 + 92540 0.69 0.922996
Target:  5'- uGCAGCAGaCAGCAGCCCgUGGccGUg-- -3'
miRNA:   3'- -UGUCGUC-GUUGUCGGG-GCUucCAauc -5'
29794 3' -54 NC_006273.1 + 94885 0.78 0.472024
Target:  5'- gACGGCAGU--CGGUCCCGgAAGGUUGGg -3'
miRNA:   3'- -UGUCGUCGuuGUCGGGGC-UUCCAAUC- -5'
29794 3' -54 NC_006273.1 + 94971 0.67 0.966138
Target:  5'- cGCGGCGGCucccucucGGCGGCUCC---GGUUGGg -3'
miRNA:   3'- -UGUCGUCG--------UUGUCGGGGcuuCCAAUC- -5'
29794 3' -54 NC_006273.1 + 98211 0.76 0.569744
Target:  5'- aGCGGCAGCGGCGGCaCCCcggcucagacGAGGcGUUAGc -3'
miRNA:   3'- -UGUCGUCGUUGUCG-GGG----------CUUC-CAAUC- -5'
29794 3' -54 NC_006273.1 + 99517 0.67 0.96922
Target:  5'- gGCGGCGGCGGCuGCUgCUGuuGGGUUGc -3'
miRNA:   3'- -UGUCGUCGUUGuCGG-GGCu-UCCAAUc -5'
29794 3' -54 NC_006273.1 + 102081 0.71 0.832427
Target:  5'- -gAGCAGCGGCGGCCacaCGcGGGUg-- -3'
miRNA:   3'- ugUCGUCGUUGUCGGg--GCuUCCAauc -5'
29794 3' -54 NC_006273.1 + 103030 0.7 0.878829
Target:  5'- cGCGGCGGCAGCGGCCgCGGc------ -3'
miRNA:   3'- -UGUCGUCGUUGUCGGgGCUuccaauc -5'
29794 3' -54 NC_006273.1 + 105424 0.75 0.620586
Target:  5'- --uGCAGCAGCAGCCCC-AGGGa--- -3'
miRNA:   3'- uguCGUCGUUGUCGGGGcUUCCaauc -5'
29794 3' -54 NC_006273.1 + 113698 0.66 0.981478
Target:  5'- cGCAGCGGCugggaucccucacGucgcgaggACAGCgCCGGAGGUg-- -3'
miRNA:   3'- -UGUCGUCG-------------U--------UGUCGgGGCUUCCAauc -5'
29794 3' -54 NC_006273.1 + 116993 0.69 0.898503
Target:  5'- gGCAGCAGCGGCGGCUaacacgacacuagCCGGgcAGGa--- -3'
miRNA:   3'- -UGUCGUCGUUGUCGG-------------GGCU--UCCaauc -5'
29794 3' -54 NC_006273.1 + 118342 0.67 0.96922
Target:  5'- -aGGCGGCAACggccgGGCCCuCGAcggcAGGUUc- -3'
miRNA:   3'- ugUCGUCGUUG-----UCGGG-GCU----UCCAAuc -5'
29794 3' -54 NC_006273.1 + 130592 0.67 0.959336
Target:  5'- -gAGCGGCAGCAGCUUCaGcAGGUg-- -3'
miRNA:   3'- ugUCGUCGUUGUCGGGG-CuUCCAauc -5'
29794 3' -54 NC_006273.1 + 132810 0.73 0.748274
Target:  5'- gGCGGCAGCAcCGGCCCCaGAcacguuauuuggccGGGUa-- -3'
miRNA:   3'- -UGUCGUCGUuGUCGGGG-CU--------------UCCAauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.