Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29794 | 3' | -54 | NC_006273.1 | + | 135873 | 0.67 | 0.959336 |
Target: 5'- aACAGCAGCAGCcGCCgCCGccaccaccGGUa-- -3' miRNA: 3'- -UGUCGUCGUUGuCGG-GGCuu------CCAauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 138160 | 0.69 | 0.917388 |
Target: 5'- gGCGGCGGCcACGGCCUgCGGgcaggcGGGUUGc -3' miRNA: 3'- -UGUCGUCGuUGUCGGG-GCU------UCCAAUc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 139562 | 0.72 | 0.779516 |
Target: 5'- gGCGGCGGCggUGGUgCgagCGGAGGUUAGg -3' miRNA: 3'- -UGUCGUCGuuGUCGgG---GCUUCCAAUC- -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 145786 | 0.71 | 0.824017 |
Target: 5'- gUAGUAGCGGCAGCCaCCGcGAGGc--- -3' miRNA: 3'- uGUCGUCGUUGUCGG-GGC-UUCCaauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 147679 | 0.71 | 0.824017 |
Target: 5'- aACAGCAGCAacagucGCAGCCCCc-GGGc--- -3' miRNA: 3'- -UGUCGUCGU------UGUCGGGGcuUCCaauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 147726 | 0.71 | 0.815433 |
Target: 5'- aACAGCAGCAacaGCAGCCaCCGAcacagcagcaccAGGc--- -3' miRNA: 3'- -UGUCGUCGU---UGUCGG-GGCU------------UCCaauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 147819 | 1.08 | 0.007247 |
Target: 5'- aACAGCAGCAACAGCCCCGAAGGUUAGc -3' miRNA: 3'- -UGUCGUCGUUGUCGGGGCUUCCAAUC- -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 148021 | 0.71 | 0.815433 |
Target: 5'- aGCGGCGGCAACAGCUUCGGGa----- -3' miRNA: 3'- -UGUCGUCGUUGUCGGGGCUUccaauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 148907 | 0.67 | 0.962845 |
Target: 5'- -aAGuCAGCAGCAGCaCCGgcGGUg-- -3' miRNA: 3'- ugUC-GUCGUUGUCGgGGCuuCCAauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 149440 | 0.66 | 0.981683 |
Target: 5'- uACGGCAaCGGCGGCgCCGguGGUa-- -3' miRNA: 3'- -UGUCGUcGUUGUCGgGGCuuCCAauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 149440 | 0.83 | 0.260328 |
Target: 5'- -gGGgGGCGACGGCCCCGAGGGcgAGg -3' miRNA: 3'- ugUCgUCGUUGUCGGGGCUUCCaaUC- -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 149569 | 0.67 | 0.959336 |
Target: 5'- -uGGCGGCGGCcgGGCCCgUGGAGGa--- -3' miRNA: 3'- ugUCGUCGUUG--UCGGG-GCUUCCaauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 150490 | 0.67 | 0.959335 |
Target: 5'- --cGCGGUGGCAGCUUgGggGGUgAGg -3' miRNA: 3'- uguCGUCGUUGUCGGGgCuuCCAaUC- -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 152004 | 0.75 | 0.641034 |
Target: 5'- gGCGGCGGCAGCAGCccgacguggCCCGcGGGUc-- -3' miRNA: 3'- -UGUCGUCGUUGUCG---------GGGCuUCCAauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 161692 | 0.69 | 0.917388 |
Target: 5'- uGCGGCGGCAcucgcuccACGGCCuCCGAcgAGcGUUGc -3' miRNA: 3'- -UGUCGUCGU--------UGUCGG-GGCU--UC-CAAUc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 161796 | 0.71 | 0.824017 |
Target: 5'- gGCAGCGGCAGCGGCgggccaggacaUCgGAGGGUc-- -3' miRNA: 3'- -UGUCGUCGUUGUCG-----------GGgCUUCCAauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 162256 | 0.7 | 0.885827 |
Target: 5'- gGCAGCGGCGggacucgcgACGGCCCuucugCGGAGGa--- -3' miRNA: 3'- -UGUCGUCGU---------UGUCGGG-----GCUUCCaauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 162784 | 0.69 | 0.917388 |
Target: 5'- gGCGGCGGCAGCGGCCgcaugucgcugCCGcuGGa--- -3' miRNA: 3'- -UGUCGUCGUUGUCGG-----------GGCuuCCaauc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 163077 | 0.7 | 0.856539 |
Target: 5'- gGCGGCGGCGACGGCggCGGcugcgGGGUUAa -3' miRNA: 3'- -UGUCGUCGUUGUCGggGCU-----UCCAAUc -5' |
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29794 | 3' | -54 | NC_006273.1 | + | 164549 | 0.71 | 0.824017 |
Target: 5'- gGCGGCGGCGGuCGGCCcgccagcgugCCGAAGGccAGg -3' miRNA: 3'- -UGUCGUCGUU-GUCGG----------GGCUUCCaaUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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