miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 3' -54 NC_006273.1 + 233443 0.66 0.981683
Target:  5'- cACGGCGGCcgUGGCCuCCGAguaaaaaaaccAGGUg-- -3'
miRNA:   3'- -UGUCGUCGuuGUCGG-GGCU-----------UCCAauc -5'
29794 3' -54 NC_006273.1 + 232970 0.72 0.788715
Target:  5'- gGCAGCAGCcgccgcGCGGCCUCGgcGGcgGGc -3'
miRNA:   3'- -UGUCGUCGu-----UGUCGGGGCuuCCaaUC- -5'
29794 3' -54 NC_006273.1 + 220343 0.69 0.905463
Target:  5'- -aGGCAGCucgGCAcGCCCCGggGcGUg-- -3'
miRNA:   3'- ugUCGUCGu--UGU-CGGGGCuuC-CAauc -5'
29794 3' -54 NC_006273.1 + 219719 0.66 0.974774
Target:  5'- aACAGCAGCAucGCAacGCCCCagcugccauAGGUg-- -3'
miRNA:   3'- -UGUCGUCGU--UGU--CGGGGcu-------UCCAauc -5'
29794 3' -54 NC_006273.1 + 215275 0.67 0.962845
Target:  5'- cCGGCuGCGAUGGUggaUCCGGAGGggGGa -3'
miRNA:   3'- uGUCGuCGUUGUCG---GGGCUUCCaaUC- -5'
29794 3' -54 NC_006273.1 + 214161 0.69 0.899148
Target:  5'- uCAGCAGCGGCAGCCacagCGgcGGc--- -3'
miRNA:   3'- uGUCGUCGUUGUCGGg---GCuuCCaauc -5'
29794 3' -54 NC_006273.1 + 213586 0.71 0.832427
Target:  5'- gACGGUAGCcACAGCCgCCGGAGa---- -3'
miRNA:   3'- -UGUCGUCGuUGUCGG-GGCUUCcaauc -5'
29794 3' -54 NC_006273.1 + 208245 0.67 0.962845
Target:  5'- gACGGCAGCGGCGgGUCCauGAGGcgGGu -3'
miRNA:   3'- -UGUCGUCGUUGU-CGGGgcUUCCaaUC- -5'
29794 3' -54 NC_006273.1 + 206251 0.69 0.905463
Target:  5'- -aGGCGGUAACGGCUCCGucuccaccAAGGgcGGa -3'
miRNA:   3'- ugUCGUCGUUGUCGGGGC--------UUCCaaUC- -5'
29794 3' -54 NC_006273.1 + 204105 0.66 0.971818
Target:  5'- --cGCGGCcGCAcGCCCCGAAcggcucuGGUUGu -3'
miRNA:   3'- uguCGUCGuUGU-CGGGGCUU-------CCAAUc -5'
29794 3' -54 NC_006273.1 + 203850 0.69 0.922996
Target:  5'- -aAGCAGCcggAGCAuGCCCCGguGGUUc- -3'
miRNA:   3'- ugUCGUCG---UUGU-CGGGGCuuCCAAuc -5'
29794 3' -54 NC_006273.1 + 197077 0.82 0.306719
Target:  5'- gGCAGCAGCGGCGGCgCCGAcGGUg-- -3'
miRNA:   3'- -UGUCGUCGUUGUCGgGGCUuCCAauc -5'
29794 3' -54 NC_006273.1 + 197045 0.66 0.97956
Target:  5'- -gAGCGGCAGCGGCgaCGAcGGUg-- -3'
miRNA:   3'- ugUCGUCGUUGUCGggGCUuCCAauc -5'
29794 3' -54 NC_006273.1 + 195825 0.66 0.981683
Target:  5'- cGCGGCcgcggGGCcgGAgGGCCuUCGggGGUUGGu -3'
miRNA:   3'- -UGUCG-----UCG--UUgUCGG-GGCuuCCAAUC- -5'
29794 3' -54 NC_006273.1 + 193277 0.66 0.972097
Target:  5'- aACAGCAGCugaaGGCUUgGGAGGagAGg -3'
miRNA:   3'- -UGUCGUCGuug-UCGGGgCUUCCaaUC- -5'
29794 3' -54 NC_006273.1 + 188973 0.67 0.951647
Target:  5'- -gGGCAGUGGCGGgCCCGAuGGg--- -3'
miRNA:   3'- ugUCGUCGUUGUCgGGGCUuCCaauc -5'
29794 3' -54 NC_006273.1 + 179895 0.72 0.797773
Target:  5'- aACAGCAagcGCAACAuGCUgCGcGGGUUAGg -3'
miRNA:   3'- -UGUCGU---CGUUGU-CGGgGCuUCCAAUC- -5'
29794 3' -54 NC_006273.1 + 167325 0.73 0.731726
Target:  5'- gGCGGCAGCGGCGGCCaCGgcGGc--- -3'
miRNA:   3'- -UGUCGUCGUUGUCGGgGCuuCCaauc -5'
29794 3' -54 NC_006273.1 + 167181 0.72 0.770186
Target:  5'- cACGGCGggcGCAGCGGCCgCGGAGGc--- -3'
miRNA:   3'- -UGUCGU---CGUUGUCGGgGCUUCCaauc -5'
29794 3' -54 NC_006273.1 + 164549 0.71 0.824017
Target:  5'- gGCGGCGGCGGuCGGCCcgccagcgugCCGAAGGccAGg -3'
miRNA:   3'- -UGUCGUCGUU-GUCGG----------GGCUUCCaaUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.