miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 3' -54 NC_006273.1 + 162256 0.7 0.885827
Target:  5'- gGCAGCGGCGggacucgcgACGGCCCuucugCGGAGGa--- -3'
miRNA:   3'- -UGUCGUCGU---------UGUCGGG-----GCUUCCaauc -5'
29794 3' -54 NC_006273.1 + 179895 0.72 0.797773
Target:  5'- aACAGCAagcGCAACAuGCUgCGcGGGUUAGg -3'
miRNA:   3'- -UGUCGU---CGUUGU-CGGgGCuUCCAAUC- -5'
29794 3' -54 NC_006273.1 + 36738 0.71 0.824017
Target:  5'- aGCGGCGGC-ACAGCucggCCCGAuGGUcGGg -3'
miRNA:   3'- -UGUCGUCGuUGUCG----GGGCUuCCAaUC- -5'
29794 3' -54 NC_006273.1 + 145786 0.71 0.824017
Target:  5'- gUAGUAGCGGCAGCCaCCGcGAGGc--- -3'
miRNA:   3'- uGUCGUCGUUGUCGG-GGC-UUCCaauc -5'
29794 3' -54 NC_006273.1 + 41246 0.71 0.824017
Target:  5'- cGCGGCgcguggAGuCGACGGCCuCCGAGGGguggUGGa -3'
miRNA:   3'- -UGUCG------UC-GUUGUCGG-GGCUUCCa---AUC- -5'
29794 3' -54 NC_006273.1 + 164549 0.71 0.824017
Target:  5'- gGCGGCGGCGGuCGGCCcgccagcgugCCGAAGGccAGg -3'
miRNA:   3'- -UGUCGUCGUU-GUCGG----------GGCUUCCaaUC- -5'
29794 3' -54 NC_006273.1 + 102081 0.71 0.832427
Target:  5'- -gAGCAGCGGCGGCCacaCGcGGGUg-- -3'
miRNA:   3'- ugUCGUCGUUGUCGGg--GCuUCCAauc -5'
29794 3' -54 NC_006273.1 + 213586 0.71 0.832427
Target:  5'- gACGGUAGCcACAGCCgCCGGAGa---- -3'
miRNA:   3'- -UGUCGUCGuUGUCGG-GGCUUCcaauc -5'
29794 3' -54 NC_006273.1 + 163077 0.7 0.856539
Target:  5'- gGCGGCGGCGACGGCggCGGcugcgGGGUUAa -3'
miRNA:   3'- -UGUCGUCGUUGUCGggGCU-----UCCAAUc -5'
29794 3' -54 NC_006273.1 + 232970 0.72 0.788715
Target:  5'- gGCAGCAGCcgccgcGCGGCCUCGgcGGcgGGc -3'
miRNA:   3'- -UGUCGUCGu-----UGUCGGGGCuuCCaaUC- -5'
29794 3' -54 NC_006273.1 + 139562 0.72 0.779516
Target:  5'- gGCGGCGGCggUGGUgCgagCGGAGGUUAGg -3'
miRNA:   3'- -UGUCGUCGuuGUCGgG---GCUUCCAAUC- -5'
29794 3' -54 NC_006273.1 + 4589 0.72 0.779516
Target:  5'- gGCAGCGGUggUGGCgCUGggGGUg-- -3'
miRNA:   3'- -UGUCGUCGuuGUCGgGGCuuCCAauc -5'
29794 3' -54 NC_006273.1 + 94885 0.78 0.472024
Target:  5'- gACGGCAGU--CGGUCCCGgAAGGUUGGg -3'
miRNA:   3'- -UGUCGUCGuuGUCGGGGC-UUCCAAUC- -5'
29794 3' -54 NC_006273.1 + 27813 0.76 0.569744
Target:  5'- gUAGCAGCAGCAGaUCCCaAGGGUUAa -3'
miRNA:   3'- uGUCGUCGUUGUC-GGGGcUUCCAAUc -5'
29794 3' -54 NC_006273.1 + 105424 0.75 0.620586
Target:  5'- --uGCAGCAGCAGCCCC-AGGGa--- -3'
miRNA:   3'- uguCGUCGUUGUCGGGGcUUCCaauc -5'
29794 3' -54 NC_006273.1 + 152004 0.75 0.641034
Target:  5'- gGCGGCGGCAGCAGCccgacguggCCCGcGGGUc-- -3'
miRNA:   3'- -UGUCGUCGUUGUCG---------GGGCuUCCAauc -5'
29794 3' -54 NC_006273.1 + 33432 0.73 0.711942
Target:  5'- gGCGGCGcGCGACAGCCCCGgcGc---- -3'
miRNA:   3'- -UGUCGU-CGUUGUCGGGGCuuCcaauc -5'
29794 3' -54 NC_006273.1 + 167325 0.73 0.731726
Target:  5'- gGCGGCAGCGGCGGCCaCGgcGGc--- -3'
miRNA:   3'- -UGUCGUCGUUGUCGGgGCuuCCaauc -5'
29794 3' -54 NC_006273.1 + 132810 0.73 0.748274
Target:  5'- gGCGGCAGCAcCGGCCCCaGAcacguuauuuggccGGGUa-- -3'
miRNA:   3'- -UGUCGUCGUuGUCGGGG-CU--------------UCCAauc -5'
29794 3' -54 NC_006273.1 + 167181 0.72 0.770186
Target:  5'- cACGGCGggcGCAGCGGCCgCGGAGGc--- -3'
miRNA:   3'- -UGUCGU---CGUUGUCGGgGCUUCCaauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.