miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 3' -54 NC_006273.1 + 147819 1.08 0.007247
Target:  5'- aACAGCAGCAACAGCCCCGAAGGUUAGc -3'
miRNA:   3'- -UGUCGUCGUUGUCGGGGCUUCCAAUC- -5'
29794 3' -54 NC_006273.1 + 220343 0.69 0.905463
Target:  5'- -aGGCAGCucgGCAcGCCCCGggGcGUg-- -3'
miRNA:   3'- ugUCGUCGu--UGU-CGGGGCuuC-CAauc -5'
29794 3' -54 NC_006273.1 + 92540 0.69 0.922996
Target:  5'- uGCAGCAGaCAGCAGCCCgUGGccGUg-- -3'
miRNA:   3'- -UGUCGUC-GUUGUCGGG-GCUucCAauc -5'
29794 3' -54 NC_006273.1 + 233443 0.66 0.981683
Target:  5'- cACGGCGGCcgUGGCCuCCGAguaaaaaaaccAGGUg-- -3'
miRNA:   3'- -UGUCGUCGuuGUCGG-GGCU-----------UCCAauc -5'
29794 3' -54 NC_006273.1 + 90265 0.72 0.779516
Target:  5'- gGCGGCGGCGaaucgcccggGCuGCCCCGcAGGUg-- -3'
miRNA:   3'- -UGUCGUCGU----------UGuCGGGGCuUCCAauc -5'
29794 3' -54 NC_006273.1 + 38077 0.72 0.788715
Target:  5'- gGCAGCAGCcgccgcGCGGCCUCGgcGGcgGGc -3'
miRNA:   3'- -UGUCGUCGu-----UGUCGGGGCuuCCaaUC- -5'
29794 3' -54 NC_006273.1 + 148021 0.71 0.815433
Target:  5'- aGCGGCGGCAACAGCUUCGGGa----- -3'
miRNA:   3'- -UGUCGUCGUUGUCGGGGCUUccaauc -5'
29794 3' -54 NC_006273.1 + 147679 0.71 0.824017
Target:  5'- aACAGCAGCAacagucGCAGCCCCc-GGGc--- -3'
miRNA:   3'- -UGUCGUCGU------UGUCGGGGcuUCCaauc -5'
29794 3' -54 NC_006273.1 + 81598 0.71 0.840656
Target:  5'- gGCGGCGGCcGCGGCCgCGgcGGa--- -3'
miRNA:   3'- -UGUCGUCGuUGUCGGgGCuuCCaauc -5'
29794 3' -54 NC_006273.1 + 86543 0.69 0.899148
Target:  5'- aGCGGCGGCAACAGCCagcgacgaucgCCGccGGccGGu -3'
miRNA:   3'- -UGUCGUCGUUGUCGG-----------GGCuuCCaaUC- -5'
29794 3' -54 NC_006273.1 + 29825 0.7 0.892601
Target:  5'- -uGGUGGCGGCAGCCaCGGAGGa--- -3'
miRNA:   3'- ugUCGUCGUUGUCGGgGCUUCCaauc -5'
29794 3' -54 NC_006273.1 + 56924 0.71 0.832428
Target:  5'- gGCGGCAGCAgcccguuugGCAGCgguuCCCGAcgAGGUUc- -3'
miRNA:   3'- -UGUCGUCGU---------UGUCG----GGGCU--UCCAAuc -5'
29794 3' -54 NC_006273.1 + 149440 0.83 0.260328
Target:  5'- -gGGgGGCGACGGCCCCGAGGGcgAGg -3'
miRNA:   3'- ugUCgUCGUUGUCGGGGCUUCCaaUC- -5'
29794 3' -54 NC_006273.1 + 116993 0.69 0.898503
Target:  5'- gGCAGCAGCGGCGGCUaacacgacacuagCCGGgcAGGa--- -3'
miRNA:   3'- -UGUCGUCGUUGUCGG-------------GGCU--UCCaauc -5'
29794 3' -54 NC_006273.1 + 2184 0.82 0.306719
Target:  5'- gGCAGCAGCGGCGGCgCCGAcGGUg-- -3'
miRNA:   3'- -UGUCGUCGUUGUCGgGGCUuCCAauc -5'
29794 3' -54 NC_006273.1 + 161796 0.71 0.824017
Target:  5'- gGCAGCGGCAGCGGCgggccaggacaUCgGAGGGUc-- -3'
miRNA:   3'- -UGUCGUCGUUGUCG-----------GGgCUUCCAauc -5'
29794 3' -54 NC_006273.1 + 214161 0.69 0.899148
Target:  5'- uCAGCAGCGGCAGCCacagCGgcGGc--- -3'
miRNA:   3'- uGUCGUCGUUGUCGGg---GCuuCCaauc -5'
29794 3' -54 NC_006273.1 + 82053 0.69 0.910346
Target:  5'- aGCGGCAGCGGCGGCagaagaggagaCGGAGGa--- -3'
miRNA:   3'- -UGUCGUCGUUGUCGgg---------GCUUCCaauc -5'
29794 3' -54 NC_006273.1 + 98211 0.76 0.569744
Target:  5'- aGCGGCAGCGGCGGCaCCCcggcucagacGAGGcGUUAGc -3'
miRNA:   3'- -UGUCGUCGUUGUCG-GGG----------CUUC-CAAUC- -5'
29794 3' -54 NC_006273.1 + 147726 0.71 0.815433
Target:  5'- aACAGCAGCAacaGCAGCCaCCGAcacagcagcaccAGGc--- -3'
miRNA:   3'- -UGUCGUCGU---UGUCGG-GGCU------------UCCaauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.