miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 3' -54 NC_006273.1 + 116993 0.69 0.898503
Target:  5'- gGCAGCAGCGGCGGCUaacacgacacuagCCGGgcAGGa--- -3'
miRNA:   3'- -UGUCGUCGUUGUCGG-------------GGCU--UCCaauc -5'
29794 3' -54 NC_006273.1 + 98211 0.76 0.569744
Target:  5'- aGCGGCAGCGGCGGCaCCCcggcucagacGAGGcGUUAGc -3'
miRNA:   3'- -UGUCGUCGUUGUCG-GGG----------CUUC-CAAUC- -5'
29794 3' -54 NC_006273.1 + 55749 0.66 0.981683
Target:  5'- uACAGCAcgGugAGCCCCGGcaAGGa--- -3'
miRNA:   3'- -UGUCGUcgUugUCGGGGCU--UCCaauc -5'
29794 3' -54 NC_006273.1 + 215275 0.67 0.962845
Target:  5'- cCGGCuGCGAUGGUggaUCCGGAGGggGGa -3'
miRNA:   3'- uGUCGuCGUUGUCG---GGGCUUCCaaUC- -5'
29794 3' -54 NC_006273.1 + 220343 0.69 0.905463
Target:  5'- -aGGCAGCucgGCAcGCCCCGggGcGUg-- -3'
miRNA:   3'- ugUCGUCGu--UGU-CGGGGCuuC-CAauc -5'
29794 3' -54 NC_006273.1 + 2184 0.82 0.306719
Target:  5'- gGCAGCAGCGGCGGCgCCGAcGGUg-- -3'
miRNA:   3'- -UGUCGUCGUUGUCGgGGCUuCCAauc -5'
29794 3' -54 NC_006273.1 + 42664 0.67 0.962845
Target:  5'- cACAcGCAGCAGCAGCCa--GAGGa--- -3'
miRNA:   3'- -UGU-CGUCGUUGUCGGggcUUCCaauc -5'
29794 3' -54 NC_006273.1 + 149440 0.83 0.260328
Target:  5'- -gGGgGGCGACGGCCCCGAGGGcgAGg -3'
miRNA:   3'- ugUCgUCGUUGUCGGGGCUUCCaaUC- -5'
29794 3' -54 NC_006273.1 + 147819 1.08 0.007247
Target:  5'- aACAGCAGCAACAGCCCCGAAGGUUAGc -3'
miRNA:   3'- -UGUCGUCGUUGUCGGGGCUUCCAAUC- -5'
29794 3' -54 NC_006273.1 + 56924 0.71 0.832428
Target:  5'- gGCGGCAGCAgcccguuugGCAGCgguuCCCGAcgAGGUUc- -3'
miRNA:   3'- -UGUCGUCGU---------UGUCG----GGGCU--UCCAAuc -5'
29794 3' -54 NC_006273.1 + 82053 0.69 0.910346
Target:  5'- aGCGGCAGCGGCGGCagaagaggagaCGGAGGa--- -3'
miRNA:   3'- -UGUCGUCGUUGUCGgg---------GCUUCCaauc -5'
29794 3' -54 NC_006273.1 + 130592 0.67 0.959336
Target:  5'- -gAGCGGCAGCAGCUUCaGcAGGUg-- -3'
miRNA:   3'- ugUCGUCGUUGUCGGGG-CuUCCAauc -5'
29794 3' -54 NC_006273.1 + 204105 0.66 0.971818
Target:  5'- --cGCGGCcGCAcGCCCCGAAcggcucuGGUUGu -3'
miRNA:   3'- uguCGUCGuUGU-CGGGGCUU-------CCAAUc -5'
29794 3' -54 NC_006273.1 + 219719 0.66 0.974774
Target:  5'- aACAGCAGCAucGCAacGCCCCagcugccauAGGUg-- -3'
miRNA:   3'- -UGUCGUCGU--UGU--CGGGGcu-------UCCAauc -5'
29794 3' -54 NC_006273.1 + 933 0.66 0.981683
Target:  5'- cGCGGCcgcggGGCcgGAgGGCCuUCGggGGUUGGu -3'
miRNA:   3'- -UGUCG-----UCG--UUgUCGG-GGCuuCCAAUC- -5'
29794 3' -54 NC_006273.1 + 81598 0.71 0.840656
Target:  5'- gGCGGCGGCcGCGGCCgCGgcGGa--- -3'
miRNA:   3'- -UGUCGUCGuUGUCGGgGCuuCCaauc -5'
29794 3' -54 NC_006273.1 + 90265 0.72 0.779516
Target:  5'- gGCGGCGGCGaaucgcccggGCuGCCCCGcAGGUg-- -3'
miRNA:   3'- -UGUCGUCGU----------UGuCGGGGCuUCCAauc -5'
29794 3' -54 NC_006273.1 + 148021 0.71 0.815433
Target:  5'- aGCGGCGGCAACAGCUUCGGGa----- -3'
miRNA:   3'- -UGUCGUCGUUGUCGGGGCUUccaauc -5'
29794 3' -54 NC_006273.1 + 148907 0.67 0.962845
Target:  5'- -aAGuCAGCAGCAGCaCCGgcGGUg-- -3'
miRNA:   3'- ugUC-GUCGUUGUCGgGGCuuCCAauc -5'
29794 3' -54 NC_006273.1 + 145786 0.71 0.824017
Target:  5'- gUAGUAGCGGCAGCCaCCGcGAGGc--- -3'
miRNA:   3'- uGUCGUCGUUGUCGG-GGC-UUCCaauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.