miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 5' -60 NC_006273.1 + 105436 0.66 0.865524
Target:  5'- -cCCAGGGACGcGGGucucACCGUCGgCGCu -3'
miRNA:   3'- guGGUCUCUGU-CUC----UGGCGGCgGCGc -5'
29794 5' -60 NC_006273.1 + 73103 0.66 0.865524
Target:  5'- gCACCAGcuGCugcuGGAgGACCGCCgacgucugcGCCGCa -3'
miRNA:   3'- -GUGGUCucUG----UCU-CUGGCGG---------CGGCGc -5'
29794 5' -60 NC_006273.1 + 129947 0.66 0.865524
Target:  5'- gCGCCGacgguGAGACccgcgucccuGGGGCUGCUGCUGCa -3'
miRNA:   3'- -GUGGU-----CUCUGu---------CUCUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 93939 0.66 0.865524
Target:  5'- gGCCAG-GACccgcgGGAGGCgCGCC-CUGCGc -3'
miRNA:   3'- gUGGUCuCUG-----UCUCUG-GCGGcGGCGC- -5'
29794 5' -60 NC_006273.1 + 45571 0.66 0.861242
Target:  5'- gGCC-GAGGCGGuacaagcugccgugcAGGCgGCCaugGCCGCGg -3'
miRNA:   3'- gUGGuCUCUGUC---------------UCUGgCGG---CGGCGC- -5'
29794 5' -60 NC_006273.1 + 85234 0.66 0.85835
Target:  5'- aACa--AGACGGAGgagacACCGUCGCCGUGc -3'
miRNA:   3'- gUGgucUCUGUCUC-----UGGCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 38169 0.66 0.85835
Target:  5'- aCACCGucucggacggcGGGACGccGAGcCCG-CGCCGCGg -3'
miRNA:   3'- -GUGGU-----------CUCUGU--CUCuGGCgGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 1170 0.66 0.85835
Target:  5'- --aCGGGGACAGGGGCauuUCGCgGCGg -3'
miRNA:   3'- gugGUCUCUGUCUCUGgc-GGCGgCGC- -5'
29794 5' -60 NC_006273.1 + 113732 0.66 0.85835
Target:  5'- gCGCCGGAGGUGGcGACgGCgGCgGCGc -3'
miRNA:   3'- -GUGGUCUCUGUCuCUGgCGgCGgCGC- -5'
29794 5' -60 NC_006273.1 + 41108 0.66 0.85835
Target:  5'- --aCGGGGACAGGGGCauuUCGCgGCGg -3'
miRNA:   3'- gugGUCUCUGUCUCUGgc-GGCGgCGC- -5'
29794 5' -60 NC_006273.1 + 38068 0.66 0.85835
Target:  5'- -uCCAGcucGGGCAGcaGCCGCCG-CGCGg -3'
miRNA:   3'- guGGUC---UCUGUCucUGGCGGCgGCGC- -5'
29794 5' -60 NC_006273.1 + 232961 0.66 0.85835
Target:  5'- -uCCAGcucGGGCAGcaGCCGCCG-CGCGg -3'
miRNA:   3'- guGGUC---UCUGUCucUGGCGGCgGCGC- -5'
29794 5' -60 NC_006273.1 + 154551 0.66 0.850994
Target:  5'- uGCUAcGAGACGGGGGgaaaCaCCGCCGUGg -3'
miRNA:   3'- gUGGU-CUCUGUCUCUg---GcGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 75246 0.66 0.850994
Target:  5'- gUACCuauGGACGaagcgcuGGCCGCCGCgGCGg -3'
miRNA:   3'- -GUGGuc-UCUGUcu-----CUGGCGGCGgCGC- -5'
29794 5' -60 NC_006273.1 + 122077 0.66 0.850994
Target:  5'- gACCAGcAGACgucgacuccagAGAGAaagcaCGUCGUCGCGc -3'
miRNA:   3'- gUGGUC-UCUG-----------UCUCUg----GCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 106138 0.66 0.850994
Target:  5'- gACCAGcGGCuu-GGCCGCgGCgGCGc -3'
miRNA:   3'- gUGGUCuCUGucuCUGGCGgCGgCGC- -5'
29794 5' -60 NC_006273.1 + 146486 0.66 0.848752
Target:  5'- uCGCCGGAGGCuGuGGCCagcGCCugguacuugacacuGCCGCu -3'
miRNA:   3'- -GUGGUCUCUGuCuCUGG---CGG--------------CGGCGc -5'
29794 5' -60 NC_006273.1 + 41477 0.66 0.846495
Target:  5'- gGCCGGAG-CGGGGGCCGUggaaggauugacaggCGUCgGCGu -3'
miRNA:   3'- gUGGUCUCuGUCUCUGGCG---------------GCGG-CGC- -5'
29794 5' -60 NC_006273.1 + 233471 0.66 0.846495
Target:  5'- aACCAGgugcugacgccAGACAGAGA-CGCCGUccucggaaucgugugCGCGa -3'
miRNA:   3'- gUGGUC-----------UCUGUCUCUgGCGGCG---------------GCGC- -5'
29794 5' -60 NC_006273.1 + 44457 0.66 0.843461
Target:  5'- gGCCAGuuGCuG-GACCGCCG-CGCu -3'
miRNA:   3'- gUGGUCucUGuCuCUGGCGGCgGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.