miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 5' -60 NC_006273.1 + 73103 0.66 0.865524
Target:  5'- gCACCAGcuGCugcuGGAgGACCGCCgacgucugcGCCGCa -3'
miRNA:   3'- -GUGGUCucUG----UCU-CUGGCGG---------CGGCGc -5'
29794 5' -60 NC_006273.1 + 105436 0.66 0.865524
Target:  5'- -cCCAGGGACGcGGGucucACCGUCGgCGCu -3'
miRNA:   3'- guGGUCUCUGU-CUC----UGGCGGCgGCGc -5'
29794 5' -60 NC_006273.1 + 232961 0.66 0.85835
Target:  5'- -uCCAGcucGGGCAGcaGCCGCCG-CGCGg -3'
miRNA:   3'- guGGUC---UCUGUCucUGGCGGCgGCGC- -5'
29794 5' -60 NC_006273.1 + 44457 0.66 0.843461
Target:  5'- gGCCAGuuGCuG-GACCGCCG-CGCu -3'
miRNA:   3'- gUGGUCucUGuCuCUGGCGGCgGCGc -5'
29794 5' -60 NC_006273.1 + 1170 0.66 0.85835
Target:  5'- --aCGGGGACAGGGGCauuUCGCgGCGg -3'
miRNA:   3'- gugGUCUCUGUCUCUGgc-GGCGgCGC- -5'
29794 5' -60 NC_006273.1 + 110245 0.66 0.827888
Target:  5'- gGCCcguGGGACGGAGACUugGgCGCCGg- -3'
miRNA:   3'- gUGGu--CUCUGUCUCUGG--CgGCGGCgc -5'
29794 5' -60 NC_006273.1 + 13585 0.66 0.827888
Target:  5'- cCGCCGGGcGGCccGGGCCGCCgugcuggaggGCCGCc -3'
miRNA:   3'- -GUGGUCU-CUGucUCUGGCGG----------CGGCGc -5'
29794 5' -60 NC_006273.1 + 48862 0.66 0.827888
Target:  5'- aGCCAGGGGC-GAGuCCGUCGUCa-- -3'
miRNA:   3'- gUGGUCUCUGuCUCuGGCGGCGGcgc -5'
29794 5' -60 NC_006273.1 + 116453 0.66 0.843461
Target:  5'- gACCAGucuccGGAC-GAGGCCgaauugcuGuuGCCGCGg -3'
miRNA:   3'- gUGGUC-----UCUGuCUCUGG--------CggCGGCGC- -5'
29794 5' -60 NC_006273.1 + 41477 0.66 0.846495
Target:  5'- gGCCGGAG-CGGGGGCCGUggaaggauugacaggCGUCgGCGu -3'
miRNA:   3'- gUGGUCUCuGUCUCUGGCG---------------GCGG-CGC- -5'
29794 5' -60 NC_006273.1 + 129947 0.66 0.865524
Target:  5'- gCGCCGacgguGAGACccgcgucccuGGGGCUGCUGCUGCa -3'
miRNA:   3'- -GUGGU-----CUCUGu---------CUCUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 38169 0.66 0.85835
Target:  5'- aCACCGucucggacggcGGGACGccGAGcCCG-CGCCGCGg -3'
miRNA:   3'- -GUGGU-----------CUCUGU--CUCuGGCgGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 153791 0.66 0.835757
Target:  5'- cCGCCGc-GGCcGcGGCCGCCGCCuGCGa -3'
miRNA:   3'- -GUGGUcuCUGuCuCUGGCGGCGG-CGC- -5'
29794 5' -60 NC_006273.1 + 61931 0.66 0.835757
Target:  5'- gCGgCGGAGACGaGGACCgGuuGCCGUu -3'
miRNA:   3'- -GUgGUCUCUGUcUCUGG-CggCGGCGc -5'
29794 5' -60 NC_006273.1 + 146486 0.66 0.848752
Target:  5'- uCGCCGGAGGCuGuGGCCagcGCCugguacuugacacuGCCGCu -3'
miRNA:   3'- -GUGGUCUCUGuCuCUGG---CGG--------------CGGCGc -5'
29794 5' -60 NC_006273.1 + 113732 0.66 0.85835
Target:  5'- gCGCCGGAGGUGGcGACgGCgGCgGCGc -3'
miRNA:   3'- -GUGGUCUCUGUCuCUGgCGgCGgCGC- -5'
29794 5' -60 NC_006273.1 + 132344 0.66 0.827888
Target:  5'- gCAUCAcGAuGAUGGAagccgcGGCCGCUGCCGCc -3'
miRNA:   3'- -GUGGU-CU-CUGUCU------CUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 93939 0.66 0.865524
Target:  5'- gGCCAG-GACccgcgGGAGGCgCGCC-CUGCGc -3'
miRNA:   3'- gUGGUCuCUG-----UCUCUG-GCGGcGGCGC- -5'
29794 5' -60 NC_006273.1 + 129525 0.66 0.835757
Target:  5'- -cCCGGAGAau--GGCCGgCGCUGCGc -3'
miRNA:   3'- guGGUCUCUgucuCUGGCgGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 21196 0.66 0.841167
Target:  5'- --aCAcAGACAGGuaugggggguggccGGCUGCCGCCGCu -3'
miRNA:   3'- gugGUcUCUGUCU--------------CUGGCGGCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.