miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 5' -60 NC_006273.1 + 68082 0.66 0.835757
Target:  5'- cCGCCGcuGuGGcCGGAGugcCCGUCGCCGCa -3'
miRNA:   3'- -GUGGU--CuCU-GUCUCu--GGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 115082 0.66 0.835757
Target:  5'- uCGCCc-GGugAGGGACCcucgucggaaGCgGCCGCGa -3'
miRNA:   3'- -GUGGucUCugUCUCUGG----------CGgCGGCGC- -5'
29794 5' -60 NC_006273.1 + 101789 0.66 0.827888
Target:  5'- cCACCAGGGcCGGcGACUGaCGCCgGCa -3'
miRNA:   3'- -GUGGUCUCuGUCuCUGGCgGCGG-CGc -5'
29794 5' -60 NC_006273.1 + 154551 0.66 0.850994
Target:  5'- uGCUAcGAGACGGGGGgaaaCaCCGCCGUGg -3'
miRNA:   3'- gUGGU-CUCUGUCUCUg---GcGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 122077 0.66 0.850994
Target:  5'- gACCAGcAGACgucgacuccagAGAGAaagcaCGUCGUCGCGc -3'
miRNA:   3'- gUGGUC-UCUG-----------UCUCUg----GCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 113732 0.66 0.85835
Target:  5'- gCGCCGGAGGUGGcGACgGCgGCgGCGc -3'
miRNA:   3'- -GUGGUCUCUGUCuCUGgCGgCGgCGC- -5'
29794 5' -60 NC_006273.1 + 13585 0.66 0.827888
Target:  5'- cCGCCGGGcGGCccGGGCCGCCgugcuggaggGCCGCc -3'
miRNA:   3'- -GUGGUCU-CUGucUCUGGCGG----------CGGCGc -5'
29794 5' -60 NC_006273.1 + 38169 0.66 0.85835
Target:  5'- aCACCGucucggacggcGGGACGccGAGcCCG-CGCCGCGg -3'
miRNA:   3'- -GUGGU-----------CUCUGU--CUCuGGCgGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 105436 0.66 0.865524
Target:  5'- -cCCAGGGACGcGGGucucACCGUCGgCGCu -3'
miRNA:   3'- guGGUCUCUGU-CUC----UGGCGGCgGCGc -5'
29794 5' -60 NC_006273.1 + 233471 0.66 0.846495
Target:  5'- aACCAGgugcugacgccAGACAGAGA-CGCCGUccucggaaucgugugCGCGa -3'
miRNA:   3'- gUGGUC-----------UCUGUCUCUgGCGGCG---------------GCGC- -5'
29794 5' -60 NC_006273.1 + 232961 0.66 0.85835
Target:  5'- -uCCAGcucGGGCAGcaGCCGCCG-CGCGg -3'
miRNA:   3'- guGGUC---UCUGUCucUGGCGGCgGCGC- -5'
29794 5' -60 NC_006273.1 + 45571 0.66 0.861242
Target:  5'- gGCC-GAGGCGGuacaagcugccgugcAGGCgGCCaugGCCGCGg -3'
miRNA:   3'- gUGGuCUCUGUC---------------UCUGgCGG---CGGCGC- -5'
29794 5' -60 NC_006273.1 + 102487 0.66 0.843461
Target:  5'- uCACCAGGGcgcgcgccGCcGAGAuUCGUCGCUGCa -3'
miRNA:   3'- -GUGGUCUC--------UGuCUCU-GGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 85788 0.66 0.843461
Target:  5'- cCGgCAGcGGCAucuAGACCGCCGCCacucGCGu -3'
miRNA:   3'- -GUgGUCuCUGUc--UCUGGCGGCGG----CGC- -5'
29794 5' -60 NC_006273.1 + 42148 0.66 0.827888
Target:  5'- aCAUCAacGGCAGcauuaacGCCGCCGCCGCc -3'
miRNA:   3'- -GUGGUcuCUGUCuc-----UGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 44035 0.66 0.827888
Target:  5'- gCGCCAgGAGGUAGAGcACgGCCGgaaagaCCGCGg -3'
miRNA:   3'- -GUGGU-CUCUGUCUC-UGgCGGC------GGCGC- -5'
29794 5' -60 NC_006273.1 + 5818 0.66 0.835757
Target:  5'- aCACCAcAGACGGuGuaACCGCCgcaucugucGCCGCc -3'
miRNA:   3'- -GUGGUcUCUGUCuC--UGGCGG---------CGGCGc -5'
29794 5' -60 NC_006273.1 + 204999 0.66 0.827888
Target:  5'- uCGCCAGAgcGACGugacGAG-CUGCgaCGCCGCGa -3'
miRNA:   3'- -GUGGUCU--CUGU----CUCuGGCG--GCGGCGC- -5'
29794 5' -60 NC_006273.1 + 85234 0.66 0.85835
Target:  5'- aACa--AGACGGAGgagacACCGUCGCCGUGc -3'
miRNA:   3'- gUGgucUCUGUCUC-----UGGCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 129947 0.66 0.865524
Target:  5'- gCGCCGacgguGAGACccgcgucccuGGGGCUGCUGCUGCa -3'
miRNA:   3'- -GUGGU-----CUCUGu---------CUCUGGCGGCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.