Results 1 - 20 of 163 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29794 | 5' | -60 | NC_006273.1 | + | 147853 | 1.07 | 0.002907 |
Target: 5'- gCACCAGAGACAGAGACCGCCGCCGCGc -3' miRNA: 3'- -GUGGUCUCUGUCUCUGGCGGCGGCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 196904 | 0.83 | 0.122689 |
Target: 5'- gGCaCGGAGACGGAGGCCGCCGgCGgGg -3' miRNA: 3'- gUG-GUCUCUGUCUCUGGCGGCgGCgC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 2011 | 0.83 | 0.122689 |
Target: 5'- gGCaCGGAGACGGAGGCCGCCGgCGgGg -3' miRNA: 3'- gUG-GUCUCUGUCUCUGGCGGCgGCgC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 65190 | 0.82 | 0.142058 |
Target: 5'- gUACCAGAGGCuGAGAUCGCCG-CGCGu -3' miRNA: 3'- -GUGGUCUCUGuCUCUGGCGGCgGCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 71837 | 0.81 | 0.160296 |
Target: 5'- aCGCaGGAGACGcGGGACCGCaCGCCGCGu -3' miRNA: 3'- -GUGgUCUCUGU-CUCUGGCG-GCGGCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 195049 | 0.78 | 0.228173 |
Target: 5'- aCGCCGcucGACGGGGAUCGCCGCCGUa -3' miRNA: 3'- -GUGGUcu-CUGUCUCUGGCGGCGGCGc -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 129729 | 0.77 | 0.298741 |
Target: 5'- uCACgCGGAGGaAGcaAGGCCGCCGCCGUGg -3' miRNA: 3'- -GUG-GUCUCUgUC--UCUGGCGGCGGCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 196866 | 0.77 | 0.298741 |
Target: 5'- gGCCGGcGACGGGGACgacguCGCCGCCaGCGg -3' miRNA: 3'- gUGGUCuCUGUCUCUG-----GCGGCGG-CGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 133379 | 0.77 | 0.261526 |
Target: 5'- gCACCAgGAGGCgcuGGAGGCCuuggauccuccGCCGCCGCGc -3' miRNA: 3'- -GUGGU-CUCUG---UCUCUGG-----------CGGCGGCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 158738 | 0.75 | 0.380387 |
Target: 5'- cCGCgaaGGGGACaacaaaaacaagacaAGAGGCCGCCGgCCGCGg -3' miRNA: 3'- -GUGg--UCUCUG---------------UCUCUGGCGGC-GGCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 213242 | 0.75 | 0.377282 |
Target: 5'- -cUCAGAGAC---GGCCGCCGCCGCu -3' miRNA: 3'- guGGUCUCUGucuCUGGCGGCGGCGc -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 140411 | 0.75 | 0.369593 |
Target: 5'- aACCGGAGccGCcgAGAGGgaGCCGCCGCGa -3' miRNA: 3'- gUGGUCUC--UG--UCUCUggCGGCGGCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 82065 | 0.74 | 0.434019 |
Target: 5'- gGCagaagaGGAGACGGAGgagugaacggucGCCGuuGCCGCGg -3' miRNA: 3'- gUGg-----UCUCUGUCUC------------UGGCggCGGCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 228747 | 0.74 | 0.434019 |
Target: 5'- uCAUCGguGAGAC-GAGGCCGCCGCC-CGa -3' miRNA: 3'- -GUGGU--CUCUGuCUCUGGCGGCGGcGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 72907 | 0.74 | 0.400983 |
Target: 5'- -cUCGGAGGagGGAGGCgGCCGCCGCu -3' miRNA: 3'- guGGUCUCUg-UCUCUGgCGGCGGCGc -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 163355 | 0.74 | 0.434019 |
Target: 5'- uGCCAGAGACGucgggcGGGACUGUCGUCGUc -3' miRNA: 3'- gUGGUCUCUGU------CUCUGGCGGCGGCGc -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 72268 | 0.73 | 0.481008 |
Target: 5'- aCACCAGAGcggcaggucgaugacGCugccgauGAGGCCGCCGCgcagCGCGg -3' miRNA: 3'- -GUGGUCUC---------------UGu------CUCUGGCGGCG----GCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 102994 | 0.73 | 0.47744 |
Target: 5'- gCGCCAGAc-CGGAGA-CGCCGUCGCGc -3' miRNA: 3'- -GUGGUCUcuGUCUCUgGCGGCGGCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 141796 | 0.73 | 0.476551 |
Target: 5'- aGCCGcGGuACAGgccgcgcAGGCCGCCGCCGCu -3' miRNA: 3'- gUGGUcUC-UGUC-------UCUGGCGGCGGCGc -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 171336 | 0.73 | 0.459805 |
Target: 5'- uCAgCAGAGAggaGGAGGCCGCgccaccaaaacCGCCGCGc -3' miRNA: 3'- -GUgGUCUCUg--UCUCUGGCG-----------GCGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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