miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 5' -60 NC_006273.1 + 147853 1.07 0.002907
Target:  5'- gCACCAGAGACAGAGACCGCCGCCGCGc -3'
miRNA:   3'- -GUGGUCUCUGUCUCUGGCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 196904 0.83 0.122689
Target:  5'- gGCaCGGAGACGGAGGCCGCCGgCGgGg -3'
miRNA:   3'- gUG-GUCUCUGUCUCUGGCGGCgGCgC- -5'
29794 5' -60 NC_006273.1 + 2011 0.83 0.122689
Target:  5'- gGCaCGGAGACGGAGGCCGCCGgCGgGg -3'
miRNA:   3'- gUG-GUCUCUGUCUCUGGCGGCgGCgC- -5'
29794 5' -60 NC_006273.1 + 65190 0.82 0.142058
Target:  5'- gUACCAGAGGCuGAGAUCGCCG-CGCGu -3'
miRNA:   3'- -GUGGUCUCUGuCUCUGGCGGCgGCGC- -5'
29794 5' -60 NC_006273.1 + 71837 0.81 0.160296
Target:  5'- aCGCaGGAGACGcGGGACCGCaCGCCGCGu -3'
miRNA:   3'- -GUGgUCUCUGU-CUCUGGCG-GCGGCGC- -5'
29794 5' -60 NC_006273.1 + 195049 0.78 0.228173
Target:  5'- aCGCCGcucGACGGGGAUCGCCGCCGUa -3'
miRNA:   3'- -GUGGUcu-CUGUCUCUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 133379 0.77 0.261526
Target:  5'- gCACCAgGAGGCgcuGGAGGCCuuggauccuccGCCGCCGCGc -3'
miRNA:   3'- -GUGGU-CUCUG---UCUCUGG-----------CGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 196866 0.77 0.298741
Target:  5'- gGCCGGcGACGGGGACgacguCGCCGCCaGCGg -3'
miRNA:   3'- gUGGUCuCUGUCUCUG-----GCGGCGG-CGC- -5'
29794 5' -60 NC_006273.1 + 129729 0.77 0.298741
Target:  5'- uCACgCGGAGGaAGcaAGGCCGCCGCCGUGg -3'
miRNA:   3'- -GUG-GUCUCUgUC--UCUGGCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 140411 0.75 0.369593
Target:  5'- aACCGGAGccGCcgAGAGGgaGCCGCCGCGa -3'
miRNA:   3'- gUGGUCUC--UG--UCUCUggCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 213242 0.75 0.377282
Target:  5'- -cUCAGAGAC---GGCCGCCGCCGCu -3'
miRNA:   3'- guGGUCUCUGucuCUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 158738 0.75 0.380387
Target:  5'- cCGCgaaGGGGACaacaaaaacaagacaAGAGGCCGCCGgCCGCGg -3'
miRNA:   3'- -GUGg--UCUCUG---------------UCUCUGGCGGC-GGCGC- -5'
29794 5' -60 NC_006273.1 + 72907 0.74 0.400983
Target:  5'- -cUCGGAGGagGGAGGCgGCCGCCGCu -3'
miRNA:   3'- guGGUCUCUg-UCUCUGgCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 228747 0.74 0.434019
Target:  5'- uCAUCGguGAGAC-GAGGCCGCCGCC-CGa -3'
miRNA:   3'- -GUGGU--CUCUGuCUCUGGCGGCGGcGC- -5'
29794 5' -60 NC_006273.1 + 163355 0.74 0.434019
Target:  5'- uGCCAGAGACGucgggcGGGACUGUCGUCGUc -3'
miRNA:   3'- gUGGUCUCUGU------CUCUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 82065 0.74 0.434019
Target:  5'- gGCagaagaGGAGACGGAGgagugaacggucGCCGuuGCCGCGg -3'
miRNA:   3'- gUGg-----UCUCUGUCUC------------UGGCggCGGCGC- -5'
29794 5' -60 NC_006273.1 + 73175 0.73 0.451118
Target:  5'- aCGgCGGAGGCGGuAGACgCGgCGCCGCa -3'
miRNA:   3'- -GUgGUCUCUGUC-UCUG-GCgGCGGCGc -5'
29794 5' -60 NC_006273.1 + 78683 0.73 0.451118
Target:  5'- gGCCGGGGuccGCGGGcACCGCCGCCGg- -3'
miRNA:   3'- gUGGUCUC---UGUCUcUGGCGGCGGCgc -5'
29794 5' -60 NC_006273.1 + 136696 0.73 0.451118
Target:  5'- gACCGGc--CGGucGCCGCCGCCGCGg -3'
miRNA:   3'- gUGGUCucuGUCucUGGCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 171336 0.73 0.459805
Target:  5'- uCAgCAGAGAggaGGAGGCCGCgccaccaaaacCGCCGCGc -3'
miRNA:   3'- -GUgGUCUCUg--UCUCUGGCG-----------GCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.