miRNA display CGI


Results 41 - 60 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 5' -60 NC_006273.1 + 145111 0.7 0.608284
Target:  5'- cCACCugcGGGGCAGcccGGGCgauuCGCCGCCGCc -3'
miRNA:   3'- -GUGGu--CUCUGUC---UCUG----GCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 204665 0.7 0.615033
Target:  5'- uGCCAGAagaaggaacaggugGACGGGGACCacaggaucauaGCCGCCgGCa -3'
miRNA:   3'- gUGGUCU--------------CUGUCUCUGG-----------CGGCGG-CGc -5'
29794 5' -60 NC_006273.1 + 99686 0.7 0.617927
Target:  5'- gCGCCGGGGGacugggAGGGACCGCgGUCGUc -3'
miRNA:   3'- -GUGGUCUCUg-----UCUCUGGCGgCGGCGc -5'
29794 5' -60 NC_006273.1 + 8263 0.7 0.617927
Target:  5'- aGCCGGuaGGGCAGcGGCgcauacccaCGCCGCCGUGg -3'
miRNA:   3'- gUGGUC--UCUGUCuCUG---------GCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 74537 0.7 0.637235
Target:  5'- gACCAGAGAggaAGAGACCaucaccgacaGCauCGCCGCa -3'
miRNA:   3'- gUGGUCUCUg--UCUCUGG----------CG--GCGGCGc -5'
29794 5' -60 NC_006273.1 + 112385 0.7 0.637235
Target:  5'- aACCAGcAGuGCgAGcucgacgaaGGACCGUCGCCGCGg -3'
miRNA:   3'- gUGGUC-UC-UG-UC---------UCUGGCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 3443 0.7 0.637235
Target:  5'- --aCGGcGACGGAGAggagcguguCCGCCGCCGgGa -3'
miRNA:   3'- gugGUCuCUGUCUCU---------GGCGGCGGCgC- -5'
29794 5' -60 NC_006273.1 + 147968 0.7 0.637235
Target:  5'- uCGCCcGAGGCGGAGgaGCCGgCgGCgGCGg -3'
miRNA:   3'- -GUGGuCUCUGUCUC--UGGC-GgCGgCGC- -5'
29794 5' -60 NC_006273.1 + 81592 0.7 0.646887
Target:  5'- -cUCGcAGGCGGcGGCCGCgGCCGCGg -3'
miRNA:   3'- guGGUcUCUGUCuCUGGCGgCGGCGC- -5'
29794 5' -60 NC_006273.1 + 169861 0.7 0.656529
Target:  5'- gUACCGcGGACgaagaAGAGGCCGCCGCuauCGCu -3'
miRNA:   3'- -GUGGUcUCUG-----UCUCUGGCGGCG---GCGc -5'
29794 5' -60 NC_006273.1 + 162191 0.7 0.656529
Target:  5'- cCGgCGGAGGCGGuGGuuGCggCGCCGCGu -3'
miRNA:   3'- -GUgGUCUCUGUCuCUggCG--GCGGCGC- -5'
29794 5' -60 NC_006273.1 + 186005 0.69 0.666153
Target:  5'- gACgAGGGucgGCAGGGcacuACCGCCGCUGCc -3'
miRNA:   3'- gUGgUCUC---UGUCUC----UGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 73893 0.69 0.666153
Target:  5'- gCGCCacAGAGAUGGAccACUGCCGCUGUGa -3'
miRNA:   3'- -GUGG--UCUCUGUCUc-UGGCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 40934 0.69 0.675753
Target:  5'- aCGCUGGGGACAGGGACgGggguugCGCCGgGg -3'
miRNA:   3'- -GUGGUCUCUGUCUCUGgCg-----GCGGCgC- -5'
29794 5' -60 NC_006273.1 + 835 0.69 0.675753
Target:  5'- gCGCCGGGGACGGGGugUuGCgGgCGCu -3'
miRNA:   3'- -GUGGUCUCUGUCUCugG-CGgCgGCGc -5'
29794 5' -60 NC_006273.1 + 40773 0.69 0.675753
Target:  5'- gCGCCGGGGACGGGGugUuGCgGgCGCu -3'
miRNA:   3'- -GUGGUCUCUGUCUCugG-CGgCgGCGc -5'
29794 5' -60 NC_006273.1 + 72593 0.69 0.68532
Target:  5'- -uCCAGcGGCAGcgacaugcGGCCGCUGCCGCc -3'
miRNA:   3'- guGGUCuCUGUCu-------CUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 155316 0.69 0.68532
Target:  5'- aCACCucgcugcuGGAC-GAGugCGCCuGCCGCGa -3'
miRNA:   3'- -GUGGuc------UCUGuCUCugGCGG-CGGCGC- -5'
29794 5' -60 NC_006273.1 + 200942 0.69 0.689137
Target:  5'- uGCCAGAGAuCAGucgcGCCGCCaaacgcaucgcucugGCCGUGg -3'
miRNA:   3'- gUGGUCUCU-GUCuc--UGGCGG---------------CGGCGC- -5'
29794 5' -60 NC_006273.1 + 101707 0.69 0.694849
Target:  5'- uGCCgGGGGGCGGGucACCGgCGCCGUGg -3'
miRNA:   3'- gUGG-UCUCUGUCUc-UGGCgGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.