miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 5' -60 NC_006273.1 + 116453 0.66 0.843461
Target:  5'- gACCAGucuccGGAC-GAGGCCgaauugcuGuuGCCGCGg -3'
miRNA:   3'- gUGGUC-----UCUGuCUCUGG--------CggCGGCGC- -5'
29794 5' -60 NC_006273.1 + 85788 0.66 0.843461
Target:  5'- cCGgCAGcGGCAucuAGACCGCCGCCacucGCGu -3'
miRNA:   3'- -GUgGUCuCUGUc--UCUGGCGGCGG----CGC- -5'
29794 5' -60 NC_006273.1 + 102487 0.66 0.843461
Target:  5'- uCACCAGGGcgcgcgccGCcGAGAuUCGUCGCUGCa -3'
miRNA:   3'- -GUGGUCUC--------UGuCUCU-GGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 194515 0.66 0.843461
Target:  5'- gGCUAGAGAaaCAGgugucGGGCaCGCCGUCGaCGg -3'
miRNA:   3'- gUGGUCUCU--GUC-----UCUG-GCGGCGGC-GC- -5'
29794 5' -60 NC_006273.1 + 21196 0.66 0.841167
Target:  5'- --aCAcAGACAGGuaugggggguggccGGCUGCCGCCGCu -3'
miRNA:   3'- gugGUcUCUGUCU--------------CUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 153791 0.66 0.835757
Target:  5'- cCGCCGc-GGCcGcGGCCGCCGCCuGCGa -3'
miRNA:   3'- -GUGGUcuCUGuCuCUGGCGGCGG-CGC- -5'
29794 5' -60 NC_006273.1 + 61931 0.66 0.835757
Target:  5'- gCGgCGGAGACGaGGACCgGuuGCCGUu -3'
miRNA:   3'- -GUgGUCUCUGUcUCUGG-CggCGGCGc -5'
29794 5' -60 NC_006273.1 + 68082 0.66 0.835757
Target:  5'- cCGCCGcuGuGGcCGGAGugcCCGUCGCCGCa -3'
miRNA:   3'- -GUGGU--CuCU-GUCUCu--GGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 115082 0.66 0.835757
Target:  5'- uCGCCc-GGugAGGGACCcucgucggaaGCgGCCGCGa -3'
miRNA:   3'- -GUGGucUCugUCUCUGG----------CGgCGGCGC- -5'
29794 5' -60 NC_006273.1 + 5818 0.66 0.835757
Target:  5'- aCACCAcAGACGGuGuaACCGCCgcaucugucGCCGCc -3'
miRNA:   3'- -GUGGUcUCUGUCuC--UGGCGG---------CGGCGc -5'
29794 5' -60 NC_006273.1 + 147757 0.66 0.835757
Target:  5'- gCACCAGGcGACaccguaucAGcuACCGCCGCaacaGCGg -3'
miRNA:   3'- -GUGGUCU-CUG--------UCucUGGCGGCGg---CGC- -5'
29794 5' -60 NC_006273.1 + 129525 0.66 0.835757
Target:  5'- -cCCGGAGAau--GGCCGgCGCUGCGc -3'
miRNA:   3'- guGGUCUCUgucuCUGGCgGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 13585 0.66 0.827888
Target:  5'- cCGCCGGGcGGCccGGGCCGCCgugcuggaggGCCGCc -3'
miRNA:   3'- -GUGGUCU-CUGucUCUGGCGG----------CGGCGc -5'
29794 5' -60 NC_006273.1 + 42148 0.66 0.827888
Target:  5'- aCAUCAacGGCAGcauuaacGCCGCCGCCGCc -3'
miRNA:   3'- -GUGGUcuCUGUCuc-----UGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 101789 0.66 0.827888
Target:  5'- cCACCAGGGcCGGcGACUGaCGCCgGCa -3'
miRNA:   3'- -GUGGUCUCuGUCuCUGGCgGCGG-CGc -5'
29794 5' -60 NC_006273.1 + 110245 0.66 0.827888
Target:  5'- gGCCcguGGGACGGAGACUugGgCGCCGg- -3'
miRNA:   3'- gUGGu--CUCUGUCUCUGG--CgGCGGCgc -5'
29794 5' -60 NC_006273.1 + 48862 0.66 0.827888
Target:  5'- aGCCAGGGGC-GAGuCCGUCGUCa-- -3'
miRNA:   3'- gUGGUCUCUGuCUCuGGCGGCGGcgc -5'
29794 5' -60 NC_006273.1 + 132344 0.66 0.827888
Target:  5'- gCAUCAcGAuGAUGGAagccgcGGCCGCUGCCGCc -3'
miRNA:   3'- -GUGGU-CU-CUGUCU------CUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 204999 0.66 0.827888
Target:  5'- uCGCCAGAgcGACGugacGAG-CUGCgaCGCCGCGa -3'
miRNA:   3'- -GUGGUCU--CUGU----CUCuGGCG--GCGGCGC- -5'
29794 5' -60 NC_006273.1 + 70815 0.66 0.827888
Target:  5'- gCGCCAGcGGCcuggccuucGGcacgcuggcGGGCCGaCCGCCGCGc -3'
miRNA:   3'- -GUGGUCuCUG---------UC---------UCUGGC-GGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.