miRNA display CGI


Results 41 - 60 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 5' -60 NC_006273.1 + 132344 0.66 0.827888
Target:  5'- gCAUCAcGAuGAUGGAagccgcGGCCGCUGCCGCc -3'
miRNA:   3'- -GUGGU-CU-CUGUCU------CUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 84834 0.67 0.819861
Target:  5'- -cCCuGaAGGCAcccGAGACgGCCGCgGCGg -3'
miRNA:   3'- guGGuC-UCUGU---CUCUGgCGGCGgCGC- -5'
29794 5' -60 NC_006273.1 + 121639 0.67 0.819861
Target:  5'- gCugCAuGAGcACGGc-GCCGCCGCCGUc -3'
miRNA:   3'- -GugGU-CUC-UGUCucUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 214995 0.67 0.819861
Target:  5'- aCGCCGcugcuGuGGCAGcGACCGUCGCaGCGa -3'
miRNA:   3'- -GUGGU-----CuCUGUCuCUGGCGGCGgCGC- -5'
29794 5' -60 NC_006273.1 + 215034 0.67 0.819861
Target:  5'- cCGCCGGuGuu-GGGACCGCUucCCGCGg -3'
miRNA:   3'- -GUGGUCuCuguCUCUGGCGGc-GGCGC- -5'
29794 5' -60 NC_006273.1 + 126984 0.67 0.819861
Target:  5'- gUACCu--GACguGGAGACCGCgGUgGCGg -3'
miRNA:   3'- -GUGGucuCUG--UCUCUGGCGgCGgCGC- -5'
29794 5' -60 NC_006273.1 + 174962 0.67 0.819861
Target:  5'- aGCUcGAGG-AGGGGCCGCUGCC-CGg -3'
miRNA:   3'- gUGGuCUCUgUCUCUGGCGGCGGcGC- -5'
29794 5' -60 NC_006273.1 + 35914 0.67 0.811682
Target:  5'- aGCgGGAGcCAacGACCGCCGUgGCGc -3'
miRNA:   3'- gUGgUCUCuGUcuCUGGCGGCGgCGC- -5'
29794 5' -60 NC_006273.1 + 211088 0.67 0.811682
Target:  5'- aGCCGGAGGCuauauGACCGCgCGUcuaagaCGCGa -3'
miRNA:   3'- gUGGUCUCUGucu--CUGGCG-GCG------GCGC- -5'
29794 5' -60 NC_006273.1 + 140202 0.67 0.811682
Target:  5'- gGCCgauggggggaggGGAGugGGGGACCacGCCcagggccagcaaGCCGCGa -3'
miRNA:   3'- gUGG------------UCUCugUCUCUGG--CGG------------CGGCGC- -5'
29794 5' -60 NC_006273.1 + 198646 0.67 0.811682
Target:  5'- gACCAucGGGCcGAGcuguGCCGCCGCuCGCGc -3'
miRNA:   3'- gUGGUc-UCUGuCUC----UGGCGGCG-GCGC- -5'
29794 5' -60 NC_006273.1 + 64735 0.67 0.810856
Target:  5'- aACCAGGGugGGuucauGCUGCCuaucuacgagacgGCCGCGa -3'
miRNA:   3'- gUGGUCUCugUCuc---UGGCGG-------------CGGCGC- -5'
29794 5' -60 NC_006273.1 + 207340 0.67 0.803358
Target:  5'- gGCUGGguGGAgAGGGAaggucgCGCCGCCGCa -3'
miRNA:   3'- gUGGUC--UCUgUCUCUg-----GCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 34485 0.67 0.803358
Target:  5'- gCACCAGAcGGCGGAaAgCGCCGgCGUu -3'
miRNA:   3'- -GUGGUCU-CUGUCUcUgGCGGCgGCGc -5'
29794 5' -60 NC_006273.1 + 1005 0.67 0.803358
Target:  5'- --aCAGGGACGGGGGuuGC-GCCGgGg -3'
miRNA:   3'- gugGUCUCUGUCUCUggCGgCGGCgC- -5'
29794 5' -60 NC_006273.1 + 233042 0.67 0.803358
Target:  5'- gCGCgCAGAaagugcGACAGcu-CCGCCGCCaGCGg -3'
miRNA:   3'- -GUG-GUCU------CUGUCucuGGCGGCGG-CGC- -5'
29794 5' -60 NC_006273.1 + 99506 0.67 0.803358
Target:  5'- gUACCGGugguGGCGGcGGCgGCUGCUGCu -3'
miRNA:   3'- -GUGGUCu---CUGUCuCUGgCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 38149 0.67 0.803358
Target:  5'- gCGCgCAGAaagugcGACAGcu-CCGCCGCCaGCGg -3'
miRNA:   3'- -GUG-GUCU------CUGUCucuGGCGGCGG-CGC- -5'
29794 5' -60 NC_006273.1 + 143142 0.67 0.803358
Target:  5'- gGCCgucuuucaGGAGACGGGcACgGCgCGCCGCa -3'
miRNA:   3'- gUGG--------UCUCUGUCUcUGgCG-GCGGCGc -5'
29794 5' -60 NC_006273.1 + 77015 0.67 0.794896
Target:  5'- aGCguGAG-CGGcGugCGCaCGCCGCGc -3'
miRNA:   3'- gUGguCUCuGUCuCugGCG-GCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.