miRNA display CGI


Results 61 - 80 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 5' -60 NC_006273.1 + 227337 0.67 0.794896
Target:  5'- aACCAGucGGCcguGGAGAggCGUCGCCGCGu -3'
miRNA:   3'- gUGGUCu-CUG---UCUCUg-GCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 77015 0.67 0.794896
Target:  5'- aGCguGAG-CGGcGugCGCaCGCCGCGc -3'
miRNA:   3'- gUGguCUCuGUCuCugGCG-GCGGCGC- -5'
29794 5' -60 NC_006273.1 + 130715 0.67 0.794896
Target:  5'- -cCCAuGGGACAGAGaACCGaCCcgaaaCCGCGg -3'
miRNA:   3'- guGGU-CUCUGUCUC-UGGC-GGc----GGCGC- -5'
29794 5' -60 NC_006273.1 + 41803 0.67 0.794896
Target:  5'- cCugCGGGGAaacGAGACUGaaaGCCGCGu -3'
miRNA:   3'- -GugGUCUCUgu-CUCUGGCgg-CGGCGC- -5'
29794 5' -60 NC_006273.1 + 29128 0.67 0.794896
Target:  5'- cCGCCcuugguGGAGACGGAGccguuACCGCCuCUGCc -3'
miRNA:   3'- -GUGG------UCUCUGUCUC-----UGGCGGcGGCGc -5'
29794 5' -60 NC_006273.1 + 171118 0.67 0.786304
Target:  5'- gCGCCAuccGCuucGGCCGCCGCCGCa -3'
miRNA:   3'- -GUGGUcucUGucuCUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 34044 0.67 0.786304
Target:  5'- cCACCgcGGAGGgcgacaaAGAGgaguggucGCCGCCGCCGUa -3'
miRNA:   3'- -GUGG--UCUCUg------UCUC--------UGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 73690 0.67 0.786304
Target:  5'- -gUCGGAGGCcguGGAgcGAgUGCCGCCGCa -3'
miRNA:   3'- guGGUCUCUG---UCU--CUgGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 203438 0.67 0.786304
Target:  5'- uCGCCuacGAGGCguugGGAGcuACUGCUGCCGCc -3'
miRNA:   3'- -GUGGu--CUCUG----UCUC--UGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 48038 0.67 0.777587
Target:  5'- cCGCCGGAcauGGCGGuGACgG-CGCCGCu -3'
miRNA:   3'- -GUGGUCU---CUGUCuCUGgCgGCGGCGc -5'
29794 5' -60 NC_006273.1 + 73329 0.67 0.777587
Target:  5'- cCACCgaGGAGACGGAuuuguuaaagacGAUa-CCGCCGCGu -3'
miRNA:   3'- -GUGG--UCUCUGUCU------------CUGgcGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 198874 0.67 0.777587
Target:  5'- cCGCCGGucucGACGGAccgCGCCGCCGuCGg -3'
miRNA:   3'- -GUGGUCu---CUGUCUcugGCGGCGGC-GC- -5'
29794 5' -60 NC_006273.1 + 68056 0.68 0.768756
Target:  5'- gGCCAGcGccGCcGuGGCCGCCGCUGCc -3'
miRNA:   3'- gUGGUCuC--UGuCuCUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 122474 0.68 0.768756
Target:  5'- uCACCAGGGuccucuguuUAGAGAUCGCCGCa--- -3'
miRNA:   3'- -GUGGUCUCu--------GUCUCUGGCGGCGgcgc -5'
29794 5' -60 NC_006273.1 + 1128 0.68 0.768756
Target:  5'- uGCCGGGGACgGGGGACUcUUGCgGCGg -3'
miRNA:   3'- gUGGUCUCUG-UCUCUGGcGGCGgCGC- -5'
29794 5' -60 NC_006273.1 + 41066 0.68 0.768756
Target:  5'- uGCCGGGGACgGGGGACUcUUGCgGCGg -3'
miRNA:   3'- gUGGUCUCUG-UCUCUGGcGGCGgCGC- -5'
29794 5' -60 NC_006273.1 + 142074 0.68 0.759815
Target:  5'- cCGCCAGcggcGACGGuuACCacggcuugcGCUGCCGCGa -3'
miRNA:   3'- -GUGGUCu---CUGUCucUGG---------CGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 134871 0.68 0.758915
Target:  5'- cCGCCAgguGAGGCGG-GAUCGCCgugugccaaccggGCUGCGa -3'
miRNA:   3'- -GUGGU---CUCUGUCuCUGGCGG-------------CGGCGC- -5'
29794 5' -60 NC_006273.1 + 203899 0.68 0.750774
Target:  5'- uGCCgauAGAGAUAGAG-CgCGCCG-CGCGa -3'
miRNA:   3'- gUGG---UCUCUGUCUCuG-GCGGCgGCGC- -5'
29794 5' -60 NC_006273.1 + 161637 0.68 0.750774
Target:  5'- gCGCCGcuGcCGGGccucGGCCGCCGCCGCc -3'
miRNA:   3'- -GUGGUcuCuGUCU----CUGGCGGCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.