miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 5' -60 NC_006273.1 + 835 0.69 0.675753
Target:  5'- gCGCCGGGGACGGGGugUuGCgGgCGCu -3'
miRNA:   3'- -GUGGUCUCUGUCUCugG-CGgCgGCGc -5'
29794 5' -60 NC_006273.1 + 1005 0.67 0.803358
Target:  5'- --aCAGGGACGGGGGuuGC-GCCGgGg -3'
miRNA:   3'- gugGUCUCUGUCUCUggCGgCGGCgC- -5'
29794 5' -60 NC_006273.1 + 1128 0.68 0.768756
Target:  5'- uGCCGGGGACgGGGGACUcUUGCgGCGg -3'
miRNA:   3'- gUGGUCUCUG-UCUCUGGcGGCGgCGC- -5'
29794 5' -60 NC_006273.1 + 1170 0.66 0.85835
Target:  5'- --aCGGGGACAGGGGCauuUCGCgGCGg -3'
miRNA:   3'- gugGUCUCUGUCUCUGgc-GGCGgCGC- -5'
29794 5' -60 NC_006273.1 + 1259 0.68 0.750774
Target:  5'- --aCGGGGACGGGGGCCuuUCGCgGCGg -3'
miRNA:   3'- gugGUCUCUGUCUCUGGc-GGCGgCGC- -5'
29794 5' -60 NC_006273.1 + 1974 0.69 0.712819
Target:  5'- gGCCGGcGACGGGGACgacgucgCGCCaGCgGCGa -3'
miRNA:   3'- gUGGUCuCUGUCUCUG-------GCGG-CGgCGC- -5'
29794 5' -60 NC_006273.1 + 2011 0.83 0.122689
Target:  5'- gGCaCGGAGACGGAGGCCGCCGgCGgGg -3'
miRNA:   3'- gUG-GUCUCUGUCUCUGGCGGCgGCgC- -5'
29794 5' -60 NC_006273.1 + 3443 0.7 0.637235
Target:  5'- --aCGGcGACGGAGAggagcguguCCGCCGCCGgGa -3'
miRNA:   3'- gugGUCuCUGUCUCU---------GGCGGCGGCgC- -5'
29794 5' -60 NC_006273.1 + 5818 0.66 0.835757
Target:  5'- aCACCAcAGACGGuGuaACCGCCgcaucugucGCCGCc -3'
miRNA:   3'- -GUGGUcUCUGUCuC--UGGCGG---------CGGCGc -5'
29794 5' -60 NC_006273.1 + 8263 0.7 0.617927
Target:  5'- aGCCGGuaGGGCAGcGGCgcauacccaCGCCGCCGUGg -3'
miRNA:   3'- gUGGUC--UCUGUCuCUG---------GCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 8372 0.68 0.732421
Target:  5'- gCAuCUAGAGACaugguuugggGGGGACCGgCGgCGCGa -3'
miRNA:   3'- -GU-GGUCUCUG----------UCUCUGGCgGCgGCGC- -5'
29794 5' -60 NC_006273.1 + 13585 0.66 0.827888
Target:  5'- cCGCCGGGcGGCccGGGCCGCCgugcuggaggGCCGCc -3'
miRNA:   3'- -GUGGUCU-CUGucUCUGGCGG----------CGGCGc -5'
29794 5' -60 NC_006273.1 + 19877 0.72 0.513667
Target:  5'- aCGCCGuuGACcuGGACCGaCCGCCGCu -3'
miRNA:   3'- -GUGGUcuCUGucUCUGGC-GGCGGCGc -5'
29794 5' -60 NC_006273.1 + 21196 0.66 0.841167
Target:  5'- --aCAcAGACAGGuaugggggguggccGGCUGCCGCCGCu -3'
miRNA:   3'- gugGUcUCUGUCU--------------CUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 29128 0.67 0.794896
Target:  5'- cCGCCcuugguGGAGACGGAGccguuACCGCCuCUGCc -3'
miRNA:   3'- -GUGG------UCUCUGUCUC-----UGGCGGcGGCGc -5'
29794 5' -60 NC_006273.1 + 31277 0.68 0.74164
Target:  5'- aACCAGAGcCGuucGGGGCgUGCgGCCGCGc -3'
miRNA:   3'- gUGGUCUCuGU---CUCUG-GCGgCGGCGC- -5'
29794 5' -60 NC_006273.1 + 34044 0.67 0.786304
Target:  5'- cCACCgcGGAGGgcgacaaAGAGgaguggucGCCGCCGCCGUa -3'
miRNA:   3'- -GUGG--UCUCUg------UCUC--------UGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 34485 0.67 0.803358
Target:  5'- gCACCAGAcGGCGGAaAgCGCCGgCGUu -3'
miRNA:   3'- -GUGGUCU-CUGUCUcUgGCGGCgGCGc -5'
29794 5' -60 NC_006273.1 + 35914 0.67 0.811682
Target:  5'- aGCgGGAGcCAacGACCGCCGUgGCGc -3'
miRNA:   3'- gUGgUCUCuGUcuCUGGCGGCGgCGC- -5'
29794 5' -60 NC_006273.1 + 38068 0.66 0.85835
Target:  5'- -uCCAGcucGGGCAGcaGCCGCCG-CGCGg -3'
miRNA:   3'- guGGUC---UCUGUCucUGGCGGCgGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.