miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 5' -60 NC_006273.1 + 38149 0.67 0.803358
Target:  5'- gCGCgCAGAaagugcGACAGcu-CCGCCGCCaGCGg -3'
miRNA:   3'- -GUG-GUCU------CUGUCucuGGCGGCGG-CGC- -5'
29794 5' -60 NC_006273.1 + 38169 0.66 0.85835
Target:  5'- aCACCGucucggacggcGGGACGccGAGcCCG-CGCCGCGg -3'
miRNA:   3'- -GUGGU-----------CUCUGU--CUCuGGCgGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 38238 0.68 0.750774
Target:  5'- gCGCCGGAGgaaACGGGGACCGgcaaCGaCgGCGg -3'
miRNA:   3'- -GUGGUCUC---UGUCUCUGGCg---GC-GgCGC- -5'
29794 5' -60 NC_006273.1 + 40773 0.69 0.675753
Target:  5'- gCGCCGGGGACGGGGugUuGCgGgCGCu -3'
miRNA:   3'- -GUGGUCUCUGUCUCugG-CGgCgGCGc -5'
29794 5' -60 NC_006273.1 + 40934 0.69 0.675753
Target:  5'- aCGCUGGGGACAGGGACgGggguugCGCCGgGg -3'
miRNA:   3'- -GUGGUCUCUGUCUCUGgCg-----GCGGCgC- -5'
29794 5' -60 NC_006273.1 + 41066 0.68 0.768756
Target:  5'- uGCCGGGGACgGGGGACUcUUGCgGCGg -3'
miRNA:   3'- gUGGUCUCUG-UCUCUGGcGGCGgCGC- -5'
29794 5' -60 NC_006273.1 + 41108 0.66 0.85835
Target:  5'- --aCGGGGACAGGGGCauuUCGCgGCGg -3'
miRNA:   3'- gugGUCUCUGUCUCUGgc-GGCGgCGC- -5'
29794 5' -60 NC_006273.1 + 41197 0.68 0.750774
Target:  5'- --aCGGGGACGGGGGCCuuUCGCgGCGg -3'
miRNA:   3'- gugGUCUCUGUCUCUGGc-GGCGgCGC- -5'
29794 5' -60 NC_006273.1 + 41477 0.66 0.846495
Target:  5'- gGCCGGAG-CGGGGGCCGUggaaggauugacaggCGUCgGCGu -3'
miRNA:   3'- gUGGUCUCuGUCUCUGGCG---------------GCGG-CGC- -5'
29794 5' -60 NC_006273.1 + 41803 0.67 0.794896
Target:  5'- cCugCGGGGAaacGAGACUGaaaGCCGCGu -3'
miRNA:   3'- -GugGUCUCUgu-CUCUGGCgg-CGGCGC- -5'
29794 5' -60 NC_006273.1 + 42148 0.66 0.827888
Target:  5'- aCAUCAacGGCAGcauuaacGCCGCCGCCGCc -3'
miRNA:   3'- -GUGGUcuCUGUCuc-----UGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 43263 0.69 0.694849
Target:  5'- cCGCCuGGGACuugucuaGCCGCUGCCGCu -3'
miRNA:   3'- -GUGGuCUCUGucuc---UGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 44035 0.66 0.827888
Target:  5'- gCGCCAgGAGGUAGAGcACgGCCGgaaagaCCGCGg -3'
miRNA:   3'- -GUGGU-CUCUGUCUC-UGgCGGC------GGCGC- -5'
29794 5' -60 NC_006273.1 + 44457 0.66 0.843461
Target:  5'- gGCCAGuuGCuG-GACCGCCG-CGCu -3'
miRNA:   3'- gUGGUCucUGuCuCUGGCGGCgGCGc -5'
29794 5' -60 NC_006273.1 + 45571 0.66 0.861242
Target:  5'- gGCC-GAGGCGGuacaagcugccgugcAGGCgGCCaugGCCGCGg -3'
miRNA:   3'- gUGGuCUCUGUC---------------UCUGgCGG---CGGCGC- -5'
29794 5' -60 NC_006273.1 + 48038 0.67 0.777587
Target:  5'- cCGCCGGAcauGGCGGuGACgG-CGCCGCu -3'
miRNA:   3'- -GUGGUCU---CUGUCuCUGgCgGCGGCGc -5'
29794 5' -60 NC_006273.1 + 48862 0.66 0.827888
Target:  5'- aGCCAGGGGC-GAGuCCGUCGUCa-- -3'
miRNA:   3'- gUGGUCUCUGuCUCuGGCGGCGGcgc -5'
29794 5' -60 NC_006273.1 + 56838 0.71 0.579475
Target:  5'- aGCCAGcGAagAGAGgcugccgcuaccACCGCCGCCGCc -3'
miRNA:   3'- gUGGUCuCUg-UCUC------------UGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 61931 0.66 0.835757
Target:  5'- gCGgCGGAGACGaGGACCgGuuGCCGUu -3'
miRNA:   3'- -GUgGUCUCUGUcUCUGG-CggCGGCGc -5'
29794 5' -60 NC_006273.1 + 64735 0.67 0.810856
Target:  5'- aACCAGGGugGGuucauGCUGCCuaucuacgagacgGCCGCGa -3'
miRNA:   3'- gUGGUCUCugUCuc---UGGCGG-------------CGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.