miRNA display CGI


Results 41 - 60 of 163 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 5' -60 NC_006273.1 + 65190 0.82 0.142058
Target:  5'- gUACCAGAGGCuGAGAUCGCCG-CGCGu -3'
miRNA:   3'- -GUGGUCUCUGuCUCUGGCGGCgGCGC- -5'
29794 5' -60 NC_006273.1 + 68056 0.68 0.768756
Target:  5'- gGCCAGcGccGCcGuGGCCGCCGCUGCc -3'
miRNA:   3'- gUGGUCuC--UGuCuCUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 68082 0.66 0.835757
Target:  5'- cCGCCGcuGuGGcCGGAGugcCCGUCGCCGCa -3'
miRNA:   3'- -GUGGU--CuCU-GUCUCu--GGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 69734 0.68 0.723125
Target:  5'- gACguaGGGGaACAGAGACCggGCCGCgGCa -3'
miRNA:   3'- gUGg--UCUC-UGUCUCUGG--CGGCGgCGc -5'
29794 5' -60 NC_006273.1 + 70815 0.66 0.827888
Target:  5'- gCGCCAGcGGCcuggccuucGGcacgcuggcGGGCCGaCCGCCGCGc -3'
miRNA:   3'- -GUGGUCuCUG---------UC---------UCUGGC-GGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 71837 0.81 0.160296
Target:  5'- aCGCaGGAGACGcGGGACCGCaCGCCGCGu -3'
miRNA:   3'- -GUGgUCUCUGU-CUCUGGCG-GCGGCGC- -5'
29794 5' -60 NC_006273.1 + 72010 0.68 0.732421
Target:  5'- -cUCGGAGACgAGcucguAGACgCGCUGCCGCa -3'
miRNA:   3'- guGGUCUCUG-UC-----UCUG-GCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 72268 0.73 0.481008
Target:  5'- aCACCAGAGcggcaggucgaugacGCugccgauGAGGCCGCCGCgcagCGCGg -3'
miRNA:   3'- -GUGGUCUC---------------UGu------CUCUGGCGGCG----GCGC- -5'
29794 5' -60 NC_006273.1 + 72593 0.69 0.68532
Target:  5'- -uCCAGcGGCAGcgacaugcGGCCGCUGCCGCc -3'
miRNA:   3'- guGGUCuCUGUCu-------CUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 72907 0.74 0.400983
Target:  5'- -cUCGGAGGagGGAGGCgGCCGCCGCu -3'
miRNA:   3'- guGGUCUCUg-UCUCUGgCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 73103 0.66 0.865524
Target:  5'- gCACCAGcuGCugcuGGAgGACCGCCgacgucugcGCCGCa -3'
miRNA:   3'- -GUGGUCucUG----UCU-CUGGCGG---------CGGCGc -5'
29794 5' -60 NC_006273.1 + 73175 0.73 0.451118
Target:  5'- aCGgCGGAGGCGGuAGACgCGgCGCCGCa -3'
miRNA:   3'- -GUgGUCUCUGUC-UCUG-GCgGCGGCGc -5'
29794 5' -60 NC_006273.1 + 73329 0.67 0.777587
Target:  5'- cCACCgaGGAGACGGAuuuguuaaagacGAUa-CCGCCGCGu -3'
miRNA:   3'- -GUGG--UCUCUGUCU------------CUGgcGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 73690 0.67 0.786304
Target:  5'- -gUCGGAGGCcguGGAgcGAgUGCCGCCGCa -3'
miRNA:   3'- guGGUCUCUG---UCU--CUgGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 73893 0.69 0.666153
Target:  5'- gCGCCacAGAGAUGGAccACUGCCGCUGUGa -3'
miRNA:   3'- -GUGG--UCUCUGUCUc-UGGCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 74537 0.7 0.637235
Target:  5'- gACCAGAGAggaAGAGACCaucaccgacaGCauCGCCGCa -3'
miRNA:   3'- gUGGUCUCUg--UCUCUGG----------CG--GCGGCGc -5'
29794 5' -60 NC_006273.1 + 75246 0.66 0.850994
Target:  5'- gUACCuauGGACGaagcgcuGGCCGCCGCgGCGg -3'
miRNA:   3'- -GUGGuc-UCUGUcu-----CUGGCGGCGgCGC- -5'
29794 5' -60 NC_006273.1 + 75448 0.69 0.704331
Target:  5'- cCACUAGcugcGGCGGAG-CCGUCGCCgGCa -3'
miRNA:   3'- -GUGGUCu---CUGUCUCuGGCGGCGG-CGc -5'
29794 5' -60 NC_006273.1 + 77015 0.67 0.794896
Target:  5'- aGCguGAG-CGGcGugCGCaCGCCGCGc -3'
miRNA:   3'- gUGguCUCuGUCuCugGCG-GCGGCGC- -5'
29794 5' -60 NC_006273.1 + 78683 0.73 0.451118
Target:  5'- gGCCGGGGuccGCGGGcACCGCCGCCGg- -3'
miRNA:   3'- gUGGUCUC---UGUCUcUGGCGGCGGCgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.