miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 5' -60 NC_006273.1 + 233702 0.71 0.598657
Target:  5'- gCGCgGGGGACGGGGuaGCCGagCGCUGCGc -3'
miRNA:   3'- -GUGgUCUCUGUCUC--UGGCg-GCGGCGC- -5'
29794 5' -60 NC_006273.1 + 233471 0.66 0.846495
Target:  5'- aACCAGgugcugacgccAGACAGAGA-CGCCGUccucggaaucgugugCGCGa -3'
miRNA:   3'- gUGGUC-----------UCUGUCUCUgGCGGCG---------------GCGC- -5'
29794 5' -60 NC_006273.1 + 233042 0.67 0.803358
Target:  5'- gCGCgCAGAaagugcGACAGcu-CCGCCGCCaGCGg -3'
miRNA:   3'- -GUG-GUCU------CUGUCucuGGCGGCGG-CGC- -5'
29794 5' -60 NC_006273.1 + 232961 0.66 0.85835
Target:  5'- -uCCAGcucGGGCAGcaGCCGCCG-CGCGg -3'
miRNA:   3'- guGGUC---UCUGUCucUGGCGGCgGCGC- -5'
29794 5' -60 NC_006273.1 + 228747 0.74 0.434019
Target:  5'- uCAUCGguGAGAC-GAGGCCGCCGCC-CGa -3'
miRNA:   3'- -GUGGU--CUCUGuCUCUGGCGGCGGcGC- -5'
29794 5' -60 NC_006273.1 + 227337 0.67 0.794896
Target:  5'- aACCAGucGGCcguGGAGAggCGUCGCCGCGu -3'
miRNA:   3'- gUGGUCu-CUG---UCUCUg-GCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 222861 0.73 0.46858
Target:  5'- uCGCCuGGAGugcGCAGAGGCaCGCauuCGCCGCGa -3'
miRNA:   3'- -GUGG-UCUC---UGUCUCUG-GCG---GCGGCGC- -5'
29794 5' -60 NC_006273.1 + 217702 0.71 0.560427
Target:  5'- -cCCAGGGGguGGGACgCGCCGCCu-- -3'
miRNA:   3'- guGGUCUCUguCUCUG-GCGGCGGcgc -5'
29794 5' -60 NC_006273.1 + 215034 0.67 0.819861
Target:  5'- cCGCCGGuGuu-GGGACCGCUucCCGCGg -3'
miRNA:   3'- -GUGGUCuCuguCUCUGGCGGc-GGCGC- -5'
29794 5' -60 NC_006273.1 + 214995 0.67 0.819861
Target:  5'- aCGCCGcugcuGuGGCAGcGACCGUCGCaGCGa -3'
miRNA:   3'- -GUGGU-----CuCUGUCuCUGGCGGCGgCGC- -5'
29794 5' -60 NC_006273.1 + 213572 0.68 0.731495
Target:  5'- --aCAGAGACAG-GACCgacgguagccacaGCCGCCGg- -3'
miRNA:   3'- gugGUCUCUGUCuCUGG-------------CGGCGGCgc -5'
29794 5' -60 NC_006273.1 + 213242 0.75 0.377282
Target:  5'- -cUCAGAGAC---GGCCGCCGCCGCu -3'
miRNA:   3'- guGGUCUCUGucuCUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 211088 0.67 0.811682
Target:  5'- aGCCGGAGGCuauauGACCGCgCGUcuaagaCGCGa -3'
miRNA:   3'- gUGGUCUCUGucu--CUGGCG-GCG------GCGC- -5'
29794 5' -60 NC_006273.1 + 210878 0.69 0.713759
Target:  5'- gACCAGAGAgaagcuacccaAGAcGGCCaCCGCCGUGg -3'
miRNA:   3'- gUGGUCUCUg----------UCU-CUGGcGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 207340 0.67 0.803358
Target:  5'- gGCUGGguGGAgAGGGAaggucgCGCCGCCGCa -3'
miRNA:   3'- gUGGUC--UCUgUCUCUg-----GCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 204999 0.66 0.827888
Target:  5'- uCGCCAGAgcGACGugacGAG-CUGCgaCGCCGCGa -3'
miRNA:   3'- -GUGGUCU--CUGU----CUCuGGCG--GCGGCGC- -5'
29794 5' -60 NC_006273.1 + 204665 0.7 0.615033
Target:  5'- uGCCAGAagaaggaacaggugGACGGGGACCacaggaucauaGCCGCCgGCa -3'
miRNA:   3'- gUGGUCU--------------CUGUCUCUGG-----------CGGCGG-CGc -5'
29794 5' -60 NC_006273.1 + 203899 0.68 0.750774
Target:  5'- uGCCgauAGAGAUAGAG-CgCGCCG-CGCGa -3'
miRNA:   3'- gUGG---UCUCUGUCUCuG-GCGGCgGCGC- -5'
29794 5' -60 NC_006273.1 + 203438 0.67 0.786304
Target:  5'- uCGCCuacGAGGCguugGGAGcuACUGCUGCCGCc -3'
miRNA:   3'- -GUGGu--CUCUG----UCUC--UGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 200942 0.69 0.689137
Target:  5'- uGCCAGAGAuCAGucgcGCCGCCaaacgcaucgcucugGCCGUGg -3'
miRNA:   3'- gUGGUCUCU-GUCuc--UGGCGG---------------CGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.