miRNA display CGI


Results 21 - 40 of 163 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 5' -60 NC_006273.1 + 198874 0.67 0.777587
Target:  5'- cCGCCGGucucGACGGAccgCGCCGCCGuCGg -3'
miRNA:   3'- -GUGGUCu---CUGUCUcugGCGGCGGC-GC- -5'
29794 5' -60 NC_006273.1 + 198646 0.67 0.811682
Target:  5'- gACCAucGGGCcGAGcuguGCCGCCGCuCGCGc -3'
miRNA:   3'- gUGGUc-UCUGuCUC----UGGCGGCG-GCGC- -5'
29794 5' -60 NC_006273.1 + 196904 0.83 0.122689
Target:  5'- gGCaCGGAGACGGAGGCCGCCGgCGgGg -3'
miRNA:   3'- gUG-GUCUCUGUCUCUGGCGGCgGCgC- -5'
29794 5' -60 NC_006273.1 + 196866 0.77 0.298741
Target:  5'- gGCCGGcGACGGGGACgacguCGCCGCCaGCGg -3'
miRNA:   3'- gUGGUCuCUGUCUCUG-----GCGGCGG-CGC- -5'
29794 5' -60 NC_006273.1 + 195049 0.78 0.228173
Target:  5'- aCGCCGcucGACGGGGAUCGCCGCCGUa -3'
miRNA:   3'- -GUGGUcu-CUGUCUCUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 194515 0.66 0.843461
Target:  5'- gGCUAGAGAaaCAGgugucGGGCaCGCCGUCGaCGg -3'
miRNA:   3'- gUGGUCUCU--GUC-----UCUG-GCGGCGGC-GC- -5'
29794 5' -60 NC_006273.1 + 194128 0.68 0.732421
Target:  5'- cCACCAccccuCGGAGGCCGUcgacuccacgCGCCGCGg -3'
miRNA:   3'- -GUGGUcucu-GUCUCUGGCG----------GCGGCGC- -5'
29794 5' -60 NC_006273.1 + 186005 0.69 0.666153
Target:  5'- gACgAGGGucgGCAGGGcacuACCGCCGCUGCc -3'
miRNA:   3'- gUGgUCUC---UGUCUC----UGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 177261 0.73 0.472114
Target:  5'- gGCgAGGGAUAGAGAaaaggacaguaaaaCGUCGCCGCGu -3'
miRNA:   3'- gUGgUCUCUGUCUCUg-------------GCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 177243 0.73 0.459805
Target:  5'- cCACCGuGGuGCGGAGGCCGCUGCgCGUGc -3'
miRNA:   3'- -GUGGUcUC-UGUCUCUGGCGGCG-GCGC- -5'
29794 5' -60 NC_006273.1 + 174962 0.67 0.819861
Target:  5'- aGCUcGAGG-AGGGGCCGCUGCC-CGg -3'
miRNA:   3'- gUGGuCUCUgUCUCUGGCGGCGGcGC- -5'
29794 5' -60 NC_006273.1 + 173330 0.69 0.713759
Target:  5'- uUACUGGcGAUcaAGuccGCCGCCGCCGCGg -3'
miRNA:   3'- -GUGGUCuCUG--UCuc-UGGCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 172193 0.72 0.522901
Target:  5'- aAgCGGAGGCAaaggcGAGGCCGCgccggccgCGCCGCGa -3'
miRNA:   3'- gUgGUCUCUGU-----CUCUGGCG--------GCGGCGC- -5'
29794 5' -60 NC_006273.1 + 171336 0.73 0.459805
Target:  5'- uCAgCAGAGAggaGGAGGCCGCgccaccaaaacCGCCGCGc -3'
miRNA:   3'- -GUgGUCUCUg--UCUCUGGCG-----------GCGGCGC- -5'
29794 5' -60 NC_006273.1 + 171118 0.67 0.786304
Target:  5'- gCGCCAuccGCuucGGCCGCCGCCGCa -3'
miRNA:   3'- -GUGGUcucUGucuCUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 169861 0.7 0.656529
Target:  5'- gUACCGcGGACgaagaAGAGGCCGCCGCuauCGCu -3'
miRNA:   3'- -GUGGUcUCUG-----UCUCUGGCGGCG---GCGc -5'
29794 5' -60 NC_006273.1 + 165914 0.68 0.750774
Target:  5'- gCGCCAcggggggaauGAGACAGAcGACUGgCGCaCGCu -3'
miRNA:   3'- -GUGGU----------CUCUGUCU-CUGGCgGCG-GCGc -5'
29794 5' -60 NC_006273.1 + 163911 0.71 0.579475
Target:  5'- aGCgaGGAGGCuGcGAUCGCCGCCGCc -3'
miRNA:   3'- gUGg-UCUCUGuCuCUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 163355 0.74 0.434019
Target:  5'- uGCCAGAGACGucgggcGGGACUGUCGUCGUc -3'
miRNA:   3'- gUGGUCUCUGU------CUCUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 162191 0.7 0.656529
Target:  5'- cCGgCGGAGGCGGuGGuuGCggCGCCGCGu -3'
miRNA:   3'- -GUgGUCUCUGUCuCUggCG--GCGGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.