miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 5' -60 NC_006273.1 + 163911 0.71 0.579475
Target:  5'- aGCgaGGAGGCuGcGAUCGCCGCCGCc -3'
miRNA:   3'- gUGg-UCUCUGuCuCUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 102994 0.73 0.47744
Target:  5'- gCGCCAGAc-CGGAGA-CGCCGUCGCGc -3'
miRNA:   3'- -GUGGUCUcuGUCUCUgGCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 72268 0.73 0.481008
Target:  5'- aCACCAGAGcggcaggucgaugacGCugccgauGAGGCCGCCGCgcagCGCGg -3'
miRNA:   3'- -GUGGUCUC---------------UGu------CUCUGGCGGCG----GCGC- -5'
29794 5' -60 NC_006273.1 + 105176 0.72 0.513667
Target:  5'- cCGCgAG-GACGGGGAaacggUCGCCGCCGUGu -3'
miRNA:   3'- -GUGgUCuCUGUCUCU-----GGCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 19877 0.72 0.513667
Target:  5'- aCGCCGuuGACcuGGACCGaCCGCCGCu -3'
miRNA:   3'- -GUGGUcuCUGucUCUGGC-GGCGGCGc -5'
29794 5' -60 NC_006273.1 + 151714 0.72 0.513667
Target:  5'- cCGCCAGcGGACGGaAGGgCGCCGCguCGCGc -3'
miRNA:   3'- -GUGGUC-UCUGUC-UCUgGCGGCG--GCGC- -5'
29794 5' -60 NC_006273.1 + 137165 0.72 0.522901
Target:  5'- aCGCCucgucuGAGcCGGGGuGCCGCCGCUGCc -3'
miRNA:   3'- -GUGGu-----CUCuGUCUC-UGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 217702 0.71 0.560427
Target:  5'- -cCCAGGGGguGGGACgCGCCGCCu-- -3'
miRNA:   3'- guGGUCUCUguCUCUG-GCGGCGGcgc -5'
29794 5' -60 NC_006273.1 + 56838 0.71 0.579475
Target:  5'- aGCCAGcGAagAGAGgcugccgcuaccACCGCCGCCGCc -3'
miRNA:   3'- gUGGUCuCUg-UCUC------------UGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 141796 0.73 0.476551
Target:  5'- aGCCGcGGuACAGgccgcgcAGGCCGCCGCCGCu -3'
miRNA:   3'- gUGGUcUC-UGUC-------UCUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 177261 0.73 0.472114
Target:  5'- gGCgAGGGAUAGAGAaaaggacaguaaaaCGUCGCCGCGu -3'
miRNA:   3'- gUGgUCUCUGUCUCUg-------------GCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 222861 0.73 0.46858
Target:  5'- uCGCCuGGAGugcGCAGAGGCaCGCauuCGCCGCGa -3'
miRNA:   3'- -GUGG-UCUC---UGUCUCUG-GCG---GCGGCGC- -5'
29794 5' -60 NC_006273.1 + 65190 0.82 0.142058
Target:  5'- gUACCAGAGGCuGAGAUCGCCG-CGCGu -3'
miRNA:   3'- -GUGGUCUCUGuCUCUGGCGGCgGCGC- -5'
29794 5' -60 NC_006273.1 + 71837 0.81 0.160296
Target:  5'- aCGCaGGAGACGcGGGACCGCaCGCCGCGu -3'
miRNA:   3'- -GUGgUCUCUGU-CUCUGGCG-GCGGCGC- -5'
29794 5' -60 NC_006273.1 + 133379 0.77 0.261526
Target:  5'- gCACCAgGAGGCgcuGGAGGCCuuggauccuccGCCGCCGCGc -3'
miRNA:   3'- -GUGGU-CUCUG---UCUCUGG-----------CGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 196866 0.77 0.298741
Target:  5'- gGCCGGcGACGGGGACgacguCGCCGCCaGCGg -3'
miRNA:   3'- gUGGUCuCUGUCUCUG-----GCGGCGG-CGC- -5'
29794 5' -60 NC_006273.1 + 158738 0.75 0.380387
Target:  5'- cCGCgaaGGGGACaacaaaaacaagacaAGAGGCCGCCGgCCGCGg -3'
miRNA:   3'- -GUGg--UCUCUG---------------UCUCUGGCGGC-GGCGC- -5'
29794 5' -60 NC_006273.1 + 163355 0.74 0.434019
Target:  5'- uGCCAGAGACGucgggcGGGACUGUCGUCGUc -3'
miRNA:   3'- gUGGUCUCUGU------CUCUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 228747 0.74 0.434019
Target:  5'- uCAUCGguGAGAC-GAGGCCGCCGCC-CGa -3'
miRNA:   3'- -GUGGU--CUCUGuCUCUGGCGGCGGcGC- -5'
29794 5' -60 NC_006273.1 + 171336 0.73 0.459805
Target:  5'- uCAgCAGAGAggaGGAGGCCGCgccaccaaaacCGCCGCGc -3'
miRNA:   3'- -GUgGUCUCUg--UCUCUGGCG-----------GCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.