miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29794 5' -60 NC_006273.1 + 147853 1.07 0.002907
Target:  5'- gCACCAGAGACAGAGACCGCCGCCGCGc -3'
miRNA:   3'- -GUGGUCUCUGUCUCUGGCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 160114 0.7 0.608284
Target:  5'- uCACCuGGuau-GAGGCgGCCGCCGCGg -3'
miRNA:   3'- -GUGGuCUcuguCUCUGgCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 74537 0.7 0.637235
Target:  5'- gACCAGAGAggaAGAGACCaucaccgacaGCauCGCCGCa -3'
miRNA:   3'- gUGGUCUCUg--UCUCUGG----------CG--GCGGCGc -5'
29794 5' -60 NC_006273.1 + 129947 0.66 0.865524
Target:  5'- gCGCCGacgguGAGACccgcgucccuGGGGCUGCUGCUGCa -3'
miRNA:   3'- -GUGGU-----CUCUGu---------CUCUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 140411 0.75 0.369593
Target:  5'- aACCGGAGccGCcgAGAGGgaGCCGCCGCGa -3'
miRNA:   3'- gUGGUCUC--UG--UCUCUggCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 213242 0.75 0.377282
Target:  5'- -cUCAGAGAC---GGCCGCCGCCGCu -3'
miRNA:   3'- guGGUCUCUGucuCUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 82065 0.74 0.434019
Target:  5'- gGCagaagaGGAGACGGAGgagugaacggucGCCGuuGCCGCGg -3'
miRNA:   3'- gUGg-----UCUCUGUCUC------------UGGCggCGGCGC- -5'
29794 5' -60 NC_006273.1 + 73175 0.73 0.451118
Target:  5'- aCGgCGGAGGCGGuAGACgCGgCGCCGCa -3'
miRNA:   3'- -GUgGUCUCUGUC-UCUG-GCgGCGGCGc -5'
29794 5' -60 NC_006273.1 + 177243 0.73 0.459805
Target:  5'- cCACCGuGGuGCGGAGGCCGCUGCgCGUGc -3'
miRNA:   3'- -GUGGUcUC-UGUCUCUGGCGGCG-GCGC- -5'
29794 5' -60 NC_006273.1 + 233702 0.71 0.598657
Target:  5'- gCGCgGGGGACGGGGuaGCCGagCGCUGCGc -3'
miRNA:   3'- -GUGgUCUCUGUCUC--UGGCg-GCGGCGC- -5'
29794 5' -60 NC_006273.1 + 172193 0.72 0.522901
Target:  5'- aAgCGGAGGCAaaggcGAGGCCGCgccggccgCGCCGCGa -3'
miRNA:   3'- gUgGUCUCUGU-----CUCUGGCG--------GCGGCGC- -5'
29794 5' -60 NC_006273.1 + 136696 0.73 0.451118
Target:  5'- gACCGGc--CGGucGCCGCCGCCGCGg -3'
miRNA:   3'- gUGGUCucuGUCucUGGCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 2011 0.83 0.122689
Target:  5'- gGCaCGGAGACGGAGGCCGCCGgCGgGg -3'
miRNA:   3'- gUG-GUCUCUGUCUCUGGCGGCgGCgC- -5'
29794 5' -60 NC_006273.1 + 90596 0.72 0.541556
Target:  5'- gCACCGGGuguGACugcaacagcGAGGCCacgGCCGCCGCGu -3'
miRNA:   3'- -GUGGUCU---CUGu--------CUCUGG---CGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 195049 0.78 0.228173
Target:  5'- aCGCCGcucGACGGGGAUCGCCGCCGUa -3'
miRNA:   3'- -GUGGUcu-CUGUCUCUGGCGGCGGCGc -5'
29794 5' -60 NC_006273.1 + 78683 0.73 0.451118
Target:  5'- gGCCGGGGuccGCGGGcACCGCCGCCGg- -3'
miRNA:   3'- gUGGUCUC---UGUCUcUGGCGGCGGCgc -5'
29794 5' -60 NC_006273.1 + 92592 0.72 0.541556
Target:  5'- cCACCAGcGACGGcGGCUGCUGuuGCu -3'
miRNA:   3'- -GUGGUCuCUGUCuCUGGCGGCggCGc -5'
29794 5' -60 NC_006273.1 + 8263 0.7 0.617927
Target:  5'- aGCCGGuaGGGCAGcGGCgcauacccaCGCCGCCGUGg -3'
miRNA:   3'- gUGGUC--UCUGUCuCUG---------GCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 129729 0.77 0.298741
Target:  5'- uCACgCGGAGGaAGcaAGGCCGCCGCCGUGg -3'
miRNA:   3'- -GUG-GUCUCUgUC--UCUGGCGGCGGCGC- -5'
29794 5' -60 NC_006273.1 + 72907 0.74 0.400983
Target:  5'- -cUCGGAGGagGGAGGCgGCCGCCGCu -3'
miRNA:   3'- guGGUCUCUg-UCUCUGgCGGCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.