Results 21 - 40 of 163 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29794 | 5' | -60 | NC_006273.1 | + | 169861 | 0.7 | 0.656529 |
Target: 5'- gUACCGcGGACgaagaAGAGGCCGCCGCuauCGCu -3' miRNA: 3'- -GUGGUcUCUG-----UCUCUGGCGGCG---GCGc -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 74537 | 0.7 | 0.637235 |
Target: 5'- gACCAGAGAggaAGAGACCaucaccgacaGCauCGCCGCa -3' miRNA: 3'- gUGGUCUCUg--UCUCUGG----------CG--GCGGCGc -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 136696 | 0.73 | 0.451118 |
Target: 5'- gACCGGc--CGGucGCCGCCGCCGCGg -3' miRNA: 3'- gUGGUCucuGUCucUGGCGGCGGCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 129729 | 0.77 | 0.298741 |
Target: 5'- uCACgCGGAGGaAGcaAGGCCGCCGCCGUGg -3' miRNA: 3'- -GUG-GUCUCUgUC--UCUGGCGGCGGCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 41197 | 0.68 | 0.750774 |
Target: 5'- --aCGGGGACGGGGGCCuuUCGCgGCGg -3' miRNA: 3'- gugGUCUCUGUCUCUGGc-GGCGgCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 200942 | 0.69 | 0.689137 |
Target: 5'- uGCCAGAGAuCAGucgcGCCGCCaaacgcaucgcucugGCCGUGg -3' miRNA: 3'- gUGGUCUCU-GUCuc--UGGCGG---------------CGGCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 160114 | 0.7 | 0.608284 |
Target: 5'- uCACCuGGuau-GAGGCgGCCGCCGCGg -3' miRNA: 3'- -GUGGuCUcuguCUCUGgCGGCGGCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 195049 | 0.78 | 0.228173 |
Target: 5'- aCGCCGcucGACGGGGAUCGCCGCCGUa -3' miRNA: 3'- -GUGGUcu-CUGUCUCUGGCGGCGGCGc -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 155316 | 0.69 | 0.68532 |
Target: 5'- aCACCucgcugcuGGAC-GAGugCGCCuGCCGCGa -3' miRNA: 3'- -GUGGuc------UCUGuCUCugGCGG-CGGCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 2011 | 0.83 | 0.122689 |
Target: 5'- gGCaCGGAGACGGAGGCCGCCGgCGgGg -3' miRNA: 3'- gUG-GUCUCUGUCUCUGGCGGCgGCgC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 8263 | 0.7 | 0.617927 |
Target: 5'- aGCCGGuaGGGCAGcGGCgcauacccaCGCCGCCGUGg -3' miRNA: 3'- gUGGUC--UCUGUCuCUG---------GCGGCGGCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 40934 | 0.69 | 0.675753 |
Target: 5'- aCGCUGGGGACAGGGACgGggguugCGCCGgGg -3' miRNA: 3'- -GUGGUCUCUGUCUCUGgCg-----GCGGCgC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 90596 | 0.72 | 0.541556 |
Target: 5'- gCACCGGGuguGACugcaacagcGAGGCCacgGCCGCCGCGu -3' miRNA: 3'- -GUGGUCU---CUGu--------CUCUGG---CGGCGGCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 177243 | 0.73 | 0.459805 |
Target: 5'- cCACCGuGGuGCGGAGGCCGCUGCgCGUGc -3' miRNA: 3'- -GUGGUcUC-UGUCUCUGGCGGCG-GCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 82065 | 0.74 | 0.434019 |
Target: 5'- gGCagaagaGGAGACGGAGgagugaacggucGCCGuuGCCGCGg -3' miRNA: 3'- gUGg-----UCUCUGUCUC------------UGGCggCGGCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 140411 | 0.75 | 0.369593 |
Target: 5'- aACCGGAGccGCcgAGAGGgaGCCGCCGCGa -3' miRNA: 3'- gUGGUCUC--UG--UCUCUggCGGCGGCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 68056 | 0.68 | 0.768756 |
Target: 5'- gGCCAGcGccGCcGuGGCCGCCGCUGCc -3' miRNA: 3'- gUGGUCuC--UGuCuCUGGCGGCGGCGc -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 161637 | 0.68 | 0.750774 |
Target: 5'- gCGCCGcuGcCGGGccucGGCCGCCGCCGCc -3' miRNA: 3'- -GUGGUcuCuGUCU----CUGGCGGCGGCGc -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 1974 | 0.69 | 0.712819 |
Target: 5'- gGCCGGcGACGGGGACgacgucgCGCCaGCgGCGa -3' miRNA: 3'- gUGGUCuCUGUCUCUG-------GCGG-CGgCGC- -5' |
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29794 | 5' | -60 | NC_006273.1 | + | 43263 | 0.69 | 0.694849 |
Target: 5'- cCGCCuGGGACuugucuaGCCGCUGCCGCu -3' miRNA: 3'- -GUGGuCUCUGucuc---UGGCGGCGGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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