miRNA display CGI


Results 1 - 20 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 22263 0.66 0.948768
Target:  5'- gAGCGAC-GCGGCUccGCCGuCGguGCGc -3'
miRNA:   3'- gUCGUUGuCGUCGG--UGGCuGUguCGU- -5'
29795 3' -56 NC_006273.1 + 222157 0.66 0.948768
Target:  5'- aGGCGAgAGCucauGCCGCaccaGACGCuGUAa -3'
miRNA:   3'- gUCGUUgUCGu---CGGUGg---CUGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 191614 0.66 0.948768
Target:  5'- cCAGCuAGCggguAGUAGCCACUGguuGCuCAGCAc -3'
miRNA:   3'- -GUCG-UUG----UCGUCGGUGGC---UGuGUCGU- -5'
29795 3' -56 NC_006273.1 + 154635 0.66 0.948768
Target:  5'- gAGCAcCGGCGGCaacgaCGAgACGGCGu -3'
miRNA:   3'- gUCGUuGUCGUCGgug--GCUgUGUCGU- -5'
29795 3' -56 NC_006273.1 + 31390 0.66 0.948768
Target:  5'- gCGGCAucGCGGCAcGCCcgaAUCGcCGCGGCu -3'
miRNA:   3'- -GUCGU--UGUCGU-CGG---UGGCuGUGUCGu -5'
29795 3' -56 NC_006273.1 + 160399 0.66 0.948768
Target:  5'- uGGCGAuCGGC-GCCGCUGAUugAGg- -3'
miRNA:   3'- gUCGUU-GUCGuCGGUGGCUGugUCgu -5'
29795 3' -56 NC_006273.1 + 116211 0.66 0.948768
Target:  5'- cCAGguGCAGCuGCgCGCCGgucucuuuccACGgAGCAa -3'
miRNA:   3'- -GUCguUGUCGuCG-GUGGC----------UGUgUCGU- -5'
29795 3' -56 NC_006273.1 + 50957 0.66 0.948768
Target:  5'- cCGGUGACgccAGCAccGCCgGCCGACAUAGaCAc -3'
miRNA:   3'- -GUCGUUG---UCGU--CGG-UGGCUGUGUC-GU- -5'
29795 3' -56 NC_006273.1 + 233649 0.66 0.948768
Target:  5'- -cGUGcCGGCccaCCGCCGGCGCAGCu -3'
miRNA:   3'- guCGUuGUCGuc-GGUGGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 49279 0.66 0.948768
Target:  5'- uGGUAACAGguGauGCgCGGCACGGUAc -3'
miRNA:   3'- gUCGUUGUCguCggUG-GCUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 209954 0.66 0.948768
Target:  5'- aCGGCGccauagguguGCAGC-GCCACgCGGCAaCAGUc -3'
miRNA:   3'- -GUCGU----------UGUCGuCGGUG-GCUGU-GUCGu -5'
29795 3' -56 NC_006273.1 + 230159 0.66 0.948768
Target:  5'- aAGC-AUAGuCAGCCGaauGAUACAGCAa -3'
miRNA:   3'- gUCGuUGUC-GUCGGUgg-CUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 166534 0.66 0.948768
Target:  5'- uGGUAACGGUGGucgcguugguuuCCACCGcuucACACAGUAa -3'
miRNA:   3'- gUCGUUGUCGUC------------GGUGGC----UGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 90750 0.66 0.948768
Target:  5'- uCAGC-ACAcGCGGCU-CCGagaaGCGCAGCGa -3'
miRNA:   3'- -GUCGuUGU-CGUCGGuGGC----UGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 2457 0.66 0.948768
Target:  5'- gCAGUGGgAGCGGCCGCgcuggGACGCGcuGCAc -3'
miRNA:   3'- -GUCGUUgUCGUCGGUGg----CUGUGU--CGU- -5'
29795 3' -56 NC_006273.1 + 153795 0.66 0.948768
Target:  5'- -cGCGGCcGCGGCCGCCG-C-CuGCGa -3'
miRNA:   3'- guCGUUGuCGUCGGUGGCuGuGuCGU- -5'
29795 3' -56 NC_006273.1 + 33664 0.66 0.948768
Target:  5'- gCAGCAGC-GCAGCCucGCCuuuaaACAGCc -3'
miRNA:   3'- -GUCGUUGuCGUCGG--UGGcug--UGUCGu -5'
29795 3' -56 NC_006273.1 + 38757 0.66 0.948768
Target:  5'- -cGUGcCGGCccaCCGCCGGCGCAGCu -3'
miRNA:   3'- guCGUuGUCGuc-GGUGGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 197350 0.66 0.948768
Target:  5'- gCAGUGGgAGCGGCCGCgcuggGACGCGcuGCAc -3'
miRNA:   3'- -GUCGUUgUCGUCGGUGg----CUGUGU--CGU- -5'
29795 3' -56 NC_006273.1 + 193266 0.66 0.948768
Target:  5'- gCAGCGugagaaACAGCAGCUGaaGGCuugggaggagagGCAGCAg -3'
miRNA:   3'- -GUCGU------UGUCGUCGGUggCUG------------UGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.