miRNA display CGI


Results 21 - 40 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 36696 0.66 0.939933
Target:  5'- cCAGCAGCgaacguagguAGCGGCCGCgagcggaGGCGCgcgAGCGg -3'
miRNA:   3'- -GUCGUUG----------UCGUCGGUGg------CUGUG---UCGU- -5'
29795 3' -56 NC_006273.1 + 37192 0.66 0.92494
Target:  5'- uCGGguACcaAGCAGCguUugCGACGCGGCc -3'
miRNA:   3'- -GUCguUG--UCGUCG--GugGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 115932 0.66 0.935168
Target:  5'- aAGCGcguCAGCAGuCCGCCGcucaaGCGCGGg- -3'
miRNA:   3'- gUCGUu--GUCGUC-GGUGGC-----UGUGUCgu -5'
29795 3' -56 NC_006273.1 + 33286 0.66 0.944465
Target:  5'- -uGCGGCGGCAGCgGuuGGCGugguugcuCAGCu -3'
miRNA:   3'- guCGUUGUCGUCGgUggCUGU--------GUCGu -5'
29795 3' -56 NC_006273.1 + 80465 0.66 0.944465
Target:  5'- aGGCGGCGGCGuacuGCCGCUuaaaaccCACGGCGg -3'
miRNA:   3'- gUCGUUGUCGU----CGGUGGcu-----GUGUCGU- -5'
29795 3' -56 NC_006273.1 + 942 0.66 0.947501
Target:  5'- gCGGCGACGGCGuuguuuucgggcguGCUgggcGCCGGCGcCGGUAa -3'
miRNA:   3'- -GUCGUUGUCGU--------------CGG----UGGCUGU-GUCGU- -5'
29795 3' -56 NC_006273.1 + 103897 0.66 0.935168
Target:  5'- gUAGUcGCGGCGGUUGCgCGcCACGGCGu -3'
miRNA:   3'- -GUCGuUGUCGUCGGUG-GCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 62040 0.66 0.930171
Target:  5'- gAGCGGCGGCA-CCG-CGGCgGCGGCGg -3'
miRNA:   3'- gUCGUUGUCGUcGGUgGCUG-UGUCGU- -5'
29795 3' -56 NC_006273.1 + 119951 0.66 0.935168
Target:  5'- cCAGCGGCAGCgcaaaGGCCaguACCGAgACcGUg -3'
miRNA:   3'- -GUCGUUGUCG-----UCGG---UGGCUgUGuCGu -5'
29795 3' -56 NC_006273.1 + 211946 0.66 0.935168
Target:  5'- aAGguGCAGguGCC-CUG-CACGGCc -3'
miRNA:   3'- gUCguUGUCguCGGuGGCuGUGUCGu -5'
29795 3' -56 NC_006273.1 + 185307 0.66 0.935168
Target:  5'- cCGGCGugGuGguGaCCACCGugcgACGCAGCu -3'
miRNA:   3'- -GUCGUugU-CguC-GGUGGC----UGUGUCGu -5'
29795 3' -56 NC_006273.1 + 39845 0.66 0.946214
Target:  5'- -cGCGGCGGCgAGCCGCUcaaagucacgcugugGACGC-GCAc -3'
miRNA:   3'- guCGUUGUCG-UCGGUGG---------------CUGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 204696 0.66 0.944465
Target:  5'- aCAGgAuCA-UAGCCGCCGGCACcGCGg -3'
miRNA:   3'- -GUCgUuGUcGUCGGUGGCUGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 38757 0.66 0.948768
Target:  5'- -cGUGcCGGCccaCCGCCGGCGCAGCu -3'
miRNA:   3'- guCGUuGUCGuc-GGUGGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 117837 0.66 0.939933
Target:  5'- gAGCGuuacgACGGUGGUCACCGugGuCAGUc -3'
miRNA:   3'- gUCGU-----UGUCGUCGGUGGCugU-GUCGu -5'
29795 3' -56 NC_006273.1 + 112564 0.66 0.946214
Target:  5'- -cGCGuCAGCGGCCGCCGGUGCuucuucuaccuggcuGGCGc -3'
miRNA:   3'- guCGUuGUCGUCGGUGGCUGUG---------------UCGU- -5'
29795 3' -56 NC_006273.1 + 233597 0.66 0.939933
Target:  5'- cCAGCAGCAccaucggcuGCAGUCGCCuuCcCGGCGu -3'
miRNA:   3'- -GUCGUUGU---------CGUCGGUGGcuGuGUCGU- -5'
29795 3' -56 NC_006273.1 + 70915 0.66 0.944465
Target:  5'- gAGUu-CAGCAGCCGCCG-CGCcGaCAu -3'
miRNA:   3'- gUCGuuGUCGUCGGUGGCuGUGuC-GU- -5'
29795 3' -56 NC_006273.1 + 69435 0.66 0.930171
Target:  5'- uGGCAugGCGGC-GCCGCUGuaGCGGCGg -3'
miRNA:   3'- gUCGU--UGUCGuCGGUGGCugUGUCGU- -5'
29795 3' -56 NC_006273.1 + 132808 0.66 0.930171
Target:  5'- aCGGCGGCAGCaccGGCC-CCaGACACGu-- -3'
miRNA:   3'- -GUCGUUGUCG---UCGGuGG-CUGUGUcgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.