miRNA display CGI


Results 41 - 60 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 185307 0.66 0.935168
Target:  5'- cCGGCGugGuGguGaCCACCGugcgACGCAGCu -3'
miRNA:   3'- -GUCGUugU-CguC-GGUGGC----UGUGUCGu -5'
29795 3' -56 NC_006273.1 + 942 0.66 0.947501
Target:  5'- gCGGCGACGGCGuuguuuucgggcguGCUgggcGCCGGCGcCGGUAa -3'
miRNA:   3'- -GUCGUUGUCGU--------------CGG----UGGCUGU-GUCGU- -5'
29795 3' -56 NC_006273.1 + 138159 0.66 0.92494
Target:  5'- uGGCGGCGGCcacGGCCugCGGgcaggcggguUGCAGCu -3'
miRNA:   3'- gUCGUUGUCG---UCGGugGCU----------GUGUCGu -5'
29795 3' -56 NC_006273.1 + 49279 0.66 0.948768
Target:  5'- uGGUAACAGguGauGCgCGGCACGGUAc -3'
miRNA:   3'- gUCGUUGUCguCggUG-GCUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 68798 0.66 0.937102
Target:  5'- gCAGCGACuggaacccggacgcGUAGCCGgCGGCGCcGCGc -3'
miRNA:   3'- -GUCGUUGu-------------CGUCGGUgGCUGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 31390 0.66 0.948768
Target:  5'- gCGGCAucGCGGCAcGCCcgaAUCGcCGCGGCu -3'
miRNA:   3'- -GUCGU--UGUCGU-CGG---UGGCuGUGUCGu -5'
29795 3' -56 NC_006273.1 + 112564 0.66 0.946214
Target:  5'- -cGCGuCAGCGGCCGCCGGUGCuucuucuaccuggcuGGCGc -3'
miRNA:   3'- guCGUuGUCGUCGGUGGCUGUG---------------UCGU- -5'
29795 3' -56 NC_006273.1 + 38757 0.66 0.948768
Target:  5'- -cGUGcCGGCccaCCGCCGGCGCAGCu -3'
miRNA:   3'- guCGUuGUCGuc-GGUGGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 209954 0.66 0.948768
Target:  5'- aCGGCGccauagguguGCAGC-GCCACgCGGCAaCAGUc -3'
miRNA:   3'- -GUCGU----------UGUCGuCGGUG-GCUGU-GUCGu -5'
29795 3' -56 NC_006273.1 + 70915 0.66 0.944465
Target:  5'- gAGUu-CAGCAGCCGCCG-CGCcGaCAu -3'
miRNA:   3'- gUCGuuGUCGUCGGUGGCuGUGuC-GU- -5'
29795 3' -56 NC_006273.1 + 118588 0.66 0.92494
Target:  5'- aAGCGACGucGCGGCCuccacgUCGuCGCAGCGc -3'
miRNA:   3'- gUCGUUGU--CGUCGGu-----GGCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 153795 0.66 0.948768
Target:  5'- -cGCGGCcGCGGCCGCCG-C-CuGCGa -3'
miRNA:   3'- guCGUUGuCGUCGGUGGCuGuGuCGU- -5'
29795 3' -56 NC_006273.1 + 73347 0.66 0.944465
Target:  5'- cCAGCAcCAGCAGaagaGCCaGCAcCAGCGg -3'
miRNA:   3'- -GUCGUuGUCGUCgg--UGGcUGU-GUCGU- -5'
29795 3' -56 NC_006273.1 + 190171 0.66 0.92494
Target:  5'- uCAGCAGCAGCuucuucuuGCCuuCGGCGC-GUAc -3'
miRNA:   3'- -GUCGUUGUCGu-------CGGugGCUGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 36696 0.66 0.939933
Target:  5'- cCAGCAGCgaacguagguAGCGGCCGCgagcggaGGCGCgcgAGCGg -3'
miRNA:   3'- -GUCGUUG----------UCGUCGGUGg------CUGUG---UCGU- -5'
29795 3' -56 NC_006273.1 + 166534 0.66 0.948768
Target:  5'- uGGUAACGGUGGucgcguugguuuCCACCGcuucACACAGUAa -3'
miRNA:   3'- gUCGUUGUCGUC------------GGUGGC----UGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 117837 0.66 0.939933
Target:  5'- gAGCGuuacgACGGUGGUCACCGugGuCAGUc -3'
miRNA:   3'- gUCGU-----UGUCGUCGGUGGCugU-GUCGu -5'
29795 3' -56 NC_006273.1 + 38642 0.66 0.92494
Target:  5'- gCAGCGACgcgGGguGCggCGCCGACGCgaacGGCu -3'
miRNA:   3'- -GUCGUUG---UCguCG--GUGGCUGUG----UCGu -5'
29795 3' -56 NC_006273.1 + 120968 0.66 0.92494
Target:  5'- aAGCGACAGaGGCUgagauuuagagcGCC-ACGCAGCAu -3'
miRNA:   3'- gUCGUUGUCgUCGG------------UGGcUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 208173 0.66 0.939933
Target:  5'- aCAGCAaaACGgcGCAGCCACauaaGGCcgugguGCAGCu -3'
miRNA:   3'- -GUCGU--UGU--CGUCGGUGg---CUG------UGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.