miRNA display CGI


Results 61 - 80 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 151093 0.66 0.939933
Target:  5'- gCAGCcACAGCuuGUCGCCGcGCACcGUAa -3'
miRNA:   3'- -GUCGuUGUCGu-CGGUGGC-UGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 196506 0.66 0.935168
Target:  5'- gAGguGguGCGGCUguaccgcugcaACCGGCugGGCGu -3'
miRNA:   3'- gUCguUguCGUCGG-----------UGGCUGugUCGU- -5'
29795 3' -56 NC_006273.1 + 80465 0.66 0.944465
Target:  5'- aGGCGGCGGCGuacuGCCGCUuaaaaccCACGGCGg -3'
miRNA:   3'- gUCGUUGUCGU----CGGUGGcu-----GUGUCGU- -5'
29795 3' -56 NC_006273.1 + 73867 0.66 0.930171
Target:  5'- -cGCGugAGC-GCgGCCGACAUgcgGGCGc -3'
miRNA:   3'- guCGUugUCGuCGgUGGCUGUG---UCGU- -5'
29795 3' -56 NC_006273.1 + 119951 0.66 0.935168
Target:  5'- cCAGCGGCAGCgcaaaGGCCaguACCGAgACcGUg -3'
miRNA:   3'- -GUCGUUGUCG-----UCGG---UGGCUgUGuCGu -5'
29795 3' -56 NC_006273.1 + 115932 0.66 0.935168
Target:  5'- aAGCGcguCAGCAGuCCGCCGcucaaGCGCGGg- -3'
miRNA:   3'- gUCGUu--GUCGUC-GGUGGC-----UGUGUCgu -5'
29795 3' -56 NC_006273.1 + 187610 0.66 0.930171
Target:  5'- -cGCAACAGCGGaUCACCa--GCGGUAg -3'
miRNA:   3'- guCGUUGUCGUC-GGUGGcugUGUCGU- -5'
29795 3' -56 NC_006273.1 + 132808 0.66 0.930171
Target:  5'- aCGGCGGCAGCaccGGCC-CCaGACACGu-- -3'
miRNA:   3'- -GUCGUUGUCG---UCGGuGG-CUGUGUcgu -5'
29795 3' -56 NC_006273.1 + 233597 0.66 0.939933
Target:  5'- cCAGCAGCAccaucggcuGCAGUCGCCuuCcCGGCGu -3'
miRNA:   3'- -GUCGUUGU---------CGUCGGUGGcuGuGUCGU- -5'
29795 3' -56 NC_006273.1 + 66436 0.66 0.939933
Target:  5'- gAGC-AC-GCAGCUGCUGACGCGcguGCAc -3'
miRNA:   3'- gUCGuUGuCGUCGGUGGCUGUGU---CGU- -5'
29795 3' -56 NC_006273.1 + 37192 0.66 0.92494
Target:  5'- uCGGguACcaAGCAGCguUugCGACGCGGCc -3'
miRNA:   3'- -GUCguUG--UCGUCG--GugGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 162918 0.66 0.944465
Target:  5'- -cGUGACGGacguGGCCGCCGGCACcgacgguGCGu -3'
miRNA:   3'- guCGUUGUCg---UCGGUGGCUGUGu------CGU- -5'
29795 3' -56 NC_006273.1 + 62040 0.66 0.930171
Target:  5'- gAGCGGCGGCA-CCG-CGGCgGCGGCGg -3'
miRNA:   3'- gUCGUUGUCGUcGGUgGCUG-UGUCGU- -5'
29795 3' -56 NC_006273.1 + 204696 0.66 0.944465
Target:  5'- aCAGgAuCA-UAGCCGCCGGCACcGCGg -3'
miRNA:   3'- -GUCgUuGUcGUCGGUGGCUGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 35797 0.66 0.930171
Target:  5'- aAGUAcaAGCGGCCAgcCUGGCGCAGgCAc -3'
miRNA:   3'- gUCGUugUCGUCGGU--GGCUGUGUC-GU- -5'
29795 3' -56 NC_006273.1 + 33286 0.66 0.944465
Target:  5'- -uGCGGCGGCAGCgGuuGGCGugguugcuCAGCu -3'
miRNA:   3'- guCGUUGUCGUCGgUggCUGU--------GUCGu -5'
29795 3' -56 NC_006273.1 + 163391 0.66 0.947501
Target:  5'- aCAGCAGCGucgcgaggaccgccGCAGCUgucuccacaGCCGGCGuuggcccccCAGCAg -3'
miRNA:   3'- -GUCGUUGU--------------CGUCGG---------UGGCUGU---------GUCGU- -5'
29795 3' -56 NC_006273.1 + 33664 0.66 0.948768
Target:  5'- gCAGCAGC-GCAGCCucGCCuuuaaACAGCc -3'
miRNA:   3'- -GUCGUUGuCGUCGG--UGGcug--UGUCGu -5'
29795 3' -56 NC_006273.1 + 31390 0.66 0.948768
Target:  5'- gCGGCAucGCGGCAcGCCcgaAUCGcCGCGGCu -3'
miRNA:   3'- -GUCGU--UGUCGU-CGG---UGGCuGUGUCGu -5'
29795 3' -56 NC_006273.1 + 112564 0.66 0.946214
Target:  5'- -cGCGuCAGCGGCCGCCGGUGCuucuucuaccuggcuGGCGc -3'
miRNA:   3'- guCGUuGUCGUCGGUGGCUGUG---------------UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.