miRNA display CGI


Results 1 - 20 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 147730 1.08 0.00413
Target:  5'- gCAGCAACAGCAGCCACCGACACAGCAg -3'
miRNA:   3'- -GUCGUUGUCGUCGGUGGCUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 122825 0.88 0.088567
Target:  5'- aAGCAcCGGCGGCCGCUGACGCGGCGa -3'
miRNA:   3'- gUCGUuGUCGUCGGUGGCUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 142792 0.86 0.127436
Target:  5'- gAGCAACAGCAGCCGCCGuCGCuggugGGCAc -3'
miRNA:   3'- gUCGUUGUCGUCGGUGGCuGUG-----UCGU- -5'
29795 3' -56 NC_006273.1 + 214161 0.84 0.168483
Target:  5'- uCAGCAGCGGCAGCCACagCGGCgGCAGCc -3'
miRNA:   3'- -GUCGUUGUCGUCGGUG--GCUG-UGUCGu -5'
29795 3' -56 NC_006273.1 + 105397 0.84 0.160228
Target:  5'- -uGCAACAGCAGCCGCCGGucgagcccgUGCAGCAg -3'
miRNA:   3'- guCGUUGUCGUCGGUGGCU---------GUGUCGU- -5'
29795 3' -56 NC_006273.1 + 232962 0.83 0.172753
Target:  5'- cCAGCucggGCAGCAGCCGCCG-CGCGGCc -3'
miRNA:   3'- -GUCGu---UGUCGUCGGUGGCuGUGUCGu -5'
29795 3' -56 NC_006273.1 + 162231 0.83 0.195572
Target:  5'- aAGCGGCGguagaaacgucGCAGCCACCGGCGCAGUu -3'
miRNA:   3'- gUCGUUGU-----------CGUCGGUGGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 38069 0.83 0.172752
Target:  5'- cCAGCucggGCAGCAGCCGCCG-CGCGGCc -3'
miRNA:   3'- -GUCGu---UGUCGUCGGUGGCuGUGUCGu -5'
29795 3' -56 NC_006273.1 + 167320 0.81 0.243291
Target:  5'- aCAGCGGCGGCAGCgGCgGcCACGGCGg -3'
miRNA:   3'- -GUCGUUGUCGUCGgUGgCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 80380 0.81 0.249153
Target:  5'- aAGCGGgAGCGGCgGCCGugGCGGCGg -3'
miRNA:   3'- gUCGUUgUCGUCGgUGGCugUGUCGU- -5'
29795 3' -56 NC_006273.1 + 67581 0.81 0.226391
Target:  5'- aCAGCAACGGCAGCUACUGG-ACGGCu -3'
miRNA:   3'- -GUCGUUGUCGUCGGUGGCUgUGUCGu -5'
29795 3' -56 NC_006273.1 + 116994 0.8 0.280227
Target:  5'- gCAGCAGCGGCGGCUAacaCGACACuAGCc -3'
miRNA:   3'- -GUCGUUGUCGUCGGUg--GCUGUG-UCGu -5'
29795 3' -56 NC_006273.1 + 111235 0.8 0.273774
Target:  5'- gCAGCAAUAGCAGCC---GACACAGCGg -3'
miRNA:   3'- -GUCGUUGUCGUCGGuggCUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 212025 0.79 0.307243
Target:  5'- aGGCGAaugcGCAGCCGCUGACACAGUc -3'
miRNA:   3'- gUCGUUgu--CGUCGGUGGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 35882 0.79 0.314302
Target:  5'- cCAGCAugaugccguGCAGCGGCgGCCaGCACAGCGg -3'
miRNA:   3'- -GUCGU---------UGUCGUCGgUGGcUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 22296 0.79 0.307244
Target:  5'- -uGCGGCAGCGGUacCCGACGCGGCAg -3'
miRNA:   3'- guCGUUGUCGUCGguGGCUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 73744 0.79 0.300307
Target:  5'- uGGCGGCGGCGGCCGaggcCCGGCAgCGGCGc -3'
miRNA:   3'- gUCGUUGUCGUCGGU----GGCUGU-GUCGU- -5'
29795 3' -56 NC_006273.1 + 194671 0.78 0.375139
Target:  5'- -cGCAACGGCAGUgcgcacaaagCGCCgGACACAGCAc -3'
miRNA:   3'- guCGUUGUCGUCG----------GUGG-CUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 7698 0.78 0.35142
Target:  5'- gCGGCGGCGGCAGUgGCCGcgGCAGCGg -3'
miRNA:   3'- -GUCGUUGUCGUCGgUGGCugUGUCGU- -5'
29795 3' -56 NC_006273.1 + 197045 0.78 0.364729
Target:  5'- gAGCGGCAGCGGCgACgacgguggcggcgaCGACACGGCGa -3'
miRNA:   3'- gUCGUUGUCGUCGgUG--------------GCUGUGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.