Results 41 - 60 of 409 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29795 | 3' | -56 | NC_006273.1 | + | 163847 | 0.75 | 0.499029 |
Target: 5'- -cGcCGGCAGCGGCCGCCGGCGagGGCc -3' miRNA: 3'- guC-GUUGUCGUCGGUGGCUGUg-UCGu -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 148907 | 0.75 | 0.518241 |
Target: 5'- aAGuCAGCAGCAG-CACCGGCGguGCGc -3' miRNA: 3'- gUC-GUUGUCGUCgGUGGCUGUguCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 33430 | 0.75 | 0.527957 |
Target: 5'- uCGGCGGCGcGCgacAGCC-CCGGCGCAGCu -3' miRNA: 3'- -GUCGUUGU-CG---UCGGuGGCUGUGUCGu -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 98693 | 0.74 | 0.547585 |
Target: 5'- -cGCGGCGGCGGCgACCGGC-CGGUc -3' miRNA: 3'- guCGUUGUCGUCGgUGGCUGuGUCGu -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 71725 | 0.74 | 0.547585 |
Target: 5'- cCAGC-GC-GCAGCC-UCGACACAGCGg -3' miRNA: 3'- -GUCGuUGuCGUCGGuGGCUGUGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 167182 | 0.74 | 0.53774 |
Target: 5'- aCGGCGggcGCAGCGGCCgcggagGCCGGCguaaACAGCGu -3' miRNA: 3'- -GUCGU---UGUCGUCGG------UGGCUG----UGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 162785 | 0.74 | 0.567437 |
Target: 5'- gCGGCGGCAGCGGCCGCaUGuCGCuGCc -3' miRNA: 3'- -GUCGUUGUCGUCGGUG-GCuGUGuCGu -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 203894 | 0.74 | 0.536759 |
Target: 5'- cCAGCGuuacccaACAGCAGCCcagGCCGACGaggaGGCGc -3' miRNA: 3'- -GUCGU-------UGUCGUCGG---UGGCUGUg---UCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 213902 | 0.74 | 0.557486 |
Target: 5'- cCGGUGGCGGCaugAGCCACCaGCugAGCAc -3' miRNA: 3'- -GUCGUUGUCG---UCGGUGGcUGugUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 22143 | 0.74 | 0.567437 |
Target: 5'- gCGGUAGCGGCGGCgGCCGuCucugaggaagaGCAGCAg -3' miRNA: 3'- -GUCGUUGUCGUCGgUGGCuG-----------UGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 102081 | 0.74 | 0.577433 |
Target: 5'- gAGCAGCGGCGGCCAC--ACGCGGg- -3' miRNA: 3'- gUCGUUGUCGUCGGUGgcUGUGUCgu -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 158246 | 0.74 | 0.574429 |
Target: 5'- cCGGCGACGGCGGUUcgccgugguuguugGCCGACGUAGCGc -3' miRNA: 3'- -GUCGUUGUCGUCGG--------------UGGCUGUGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 72600 | 0.74 | 0.557485 |
Target: 5'- gCAGCGACAuGCGGCCGCUGcCGCcGCc -3' miRNA: 3'- -GUCGUUGU-CGUCGGUGGCuGUGuCGu -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 8024 | 0.74 | 0.567437 |
Target: 5'- uGGCGGCGGCAgacccaacaugcGCCGaaGACACAGCu -3' miRNA: 3'- gUCGUUGUCGU------------CGGUggCUGUGUCGu -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 147786 | 0.74 | 0.581442 |
Target: 5'- -cGCAACAGCGGCgACgGACggcgucgcaucaucaACAGCAg -3' miRNA: 3'- guCGUUGUCGUCGgUGgCUG---------------UGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 88139 | 0.73 | 0.62785 |
Target: 5'- uCAGCGAC-GCGGCCAgCGccuCGCAGCc -3' miRNA: 3'- -GUCGUUGuCGUCGGUgGCu--GUGUCGu -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 59497 | 0.73 | 0.637973 |
Target: 5'- aCAGCGACAGCuGcCCAUCGcgACAGCGc -3' miRNA: 3'- -GUCGUUGUCGuC-GGUGGCugUGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 37720 | 0.73 | 0.587467 |
Target: 5'- aAGCAGCuGUcGCCgcguagaaACCGACGCAGCGu -3' miRNA: 3'- gUCGUUGuCGuCGG--------UGGCUGUGUCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 51592 | 0.73 | 0.587467 |
Target: 5'- uGGCGGCGGCAGCgGggucuucuuCCGACACgGGCGa -3' miRNA: 3'- gUCGUUGUCGUCGgU---------GGCUGUG-UCGU- -5' |
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29795 | 3' | -56 | NC_006273.1 | + | 233333 | 0.73 | 0.62785 |
Target: 5'- aCAGCAgaccccACGGCuccuGCCAUCGcGCACGGCGc -3' miRNA: 3'- -GUCGU------UGUCGu---CGGUGGC-UGUGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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