miRNA display CGI


Results 21 - 40 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 234609 0.78 0.375139
Target:  5'- -cGCAACGGCAGUgcgcacaaagCGCCgGACACAGCAc -3'
miRNA:   3'- guCGUUGUCGUCG----------GUGG-CUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 177932 0.77 0.383283
Target:  5'- aCAGacaAACAGaCAGCCAcacCCGACACAGCc -3'
miRNA:   3'- -GUCg--UUGUC-GUCGGU---GGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 135874 0.77 0.391543
Target:  5'- aCAGCAGCAGCcGCCGCCGcCACcaccGGUAc -3'
miRNA:   3'- -GUCGUUGUCGuCGGUGGCuGUG----UCGU- -5'
29795 3' -56 NC_006273.1 + 145786 0.77 0.408408
Target:  5'- gUAGUAGCGGCAGCCACCG-CGaGGCc -3'
miRNA:   3'- -GUCGUUGUCGUCGGUGGCuGUgUCGu -5'
29795 3' -56 NC_006273.1 + 189794 0.77 0.417008
Target:  5'- gAGCcGCGGCcauGGCCGCCuGCACGGCAg -3'
miRNA:   3'- gUCGuUGUCG---UCGGUGGcUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 47289 0.76 0.425718
Target:  5'- aCGGCAGCGGCuGUCGCuuCGACACGGUg -3'
miRNA:   3'- -GUCGUUGUCGuCGGUG--GCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 218195 0.76 0.434536
Target:  5'- uGGCAugGGCGGCgGCCGACGgcggacgacCGGCAu -3'
miRNA:   3'- gUCGUugUCGUCGgUGGCUGU---------GUCGU- -5'
29795 3' -56 NC_006273.1 + 2182 0.76 0.434536
Target:  5'- gCGGCAGCAGCGGCggCGCCGACGguGa- -3'
miRNA:   3'- -GUCGUUGUCGUCG--GUGGCUGUguCgu -5'
29795 3' -56 NC_006273.1 + 204184 0.76 0.434536
Target:  5'- gCGGCAACcagGGCAGCCuggacGCCGGC-CGGCAa -3'
miRNA:   3'- -GUCGUUG---UCGUCGG-----UGGCUGuGUCGU- -5'
29795 3' -56 NC_006273.1 + 197075 0.76 0.434536
Target:  5'- gCGGCAGCAGCGGCggCGCCGACGguGa- -3'
miRNA:   3'- -GUCGUUGUCGUCG--GUGGCUGUguCgu -5'
29795 3' -56 NC_006273.1 + 34228 0.76 0.452484
Target:  5'- gGGCAacccGCGGCacagGGCCGCCGGCagGCAGCGg -3'
miRNA:   3'- gUCGU----UGUCG----UCGGUGGCUG--UGUCGU- -5'
29795 3' -56 NC_006273.1 + 69685 0.76 0.46069
Target:  5'- gCAGCAGgAGCugacGGCCGCCGAUcgcguagGCAGCGg -3'
miRNA:   3'- -GUCGUUgUCG----UCGGUGGCUG-------UGUCGU- -5'
29795 3' -56 NC_006273.1 + 190133 0.76 0.461607
Target:  5'- gCGGCGcgAGCAGCCGCCGG-GCGGCAc -3'
miRNA:   3'- -GUCGUugUCGUCGGUGGCUgUGUCGU- -5'
29795 3' -56 NC_006273.1 + 196994 0.76 0.470827
Target:  5'- -cGCAGCGGCGGCgACgGACgGCGGCGg -3'
miRNA:   3'- guCGUUGUCGUCGgUGgCUG-UGUCGU- -5'
29795 3' -56 NC_006273.1 + 87747 0.75 0.48014
Target:  5'- uGGCuGCGGCGGCCGuuGuCGCGGCGu -3'
miRNA:   3'- gUCGuUGUCGUCGGUggCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 92595 0.75 0.48014
Target:  5'- cCAGCGACGGCGGCUGCUGuugcuCGcCAGCGg -3'
miRNA:   3'- -GUCGUUGUCGUCGGUGGCu----GU-GUCGU- -5'
29795 3' -56 NC_006273.1 + 214990 0.75 0.48014
Target:  5'- gGGCGACgccgcugcuguGGCAGCgACCGuCGCAGCGa -3'
miRNA:   3'- gUCGUUG-----------UCGUCGgUGGCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 21913 0.75 0.489542
Target:  5'- gCGGaCAACAacuGCAGCCGCCGGCAUcgGGUAg -3'
miRNA:   3'- -GUC-GUUGU---CGUCGGUGGCUGUG--UCGU- -5'
29795 3' -56 NC_006273.1 + 163847 0.75 0.499029
Target:  5'- -cGcCGGCAGCGGCCGCCGGCGagGGCc -3'
miRNA:   3'- guC-GUUGUCGUCGGUGGCUGUg-UCGu -5'
29795 3' -56 NC_006273.1 + 133750 0.75 0.508596
Target:  5'- cUAGCGACGGCGGCCAUgGAgcugcacucaCGCGGCc -3'
miRNA:   3'- -GUCGUUGUCGUCGGUGgCU----------GUGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.