miRNA display CGI


Results 41 - 60 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 148907 0.75 0.518241
Target:  5'- aAGuCAGCAGCAG-CACCGGCGguGCGc -3'
miRNA:   3'- gUC-GUUGUCGUCgGUGGCUGUguCGU- -5'
29795 3' -56 NC_006273.1 + 33430 0.75 0.527957
Target:  5'- uCGGCGGCGcGCgacAGCC-CCGGCGCAGCu -3'
miRNA:   3'- -GUCGUUGU-CG---UCGGuGGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 81594 0.75 0.527957
Target:  5'- -cGCAgGCGGCGGCCGCgGcCGCGGCGg -3'
miRNA:   3'- guCGU-UGUCGUCGGUGgCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 203894 0.74 0.536759
Target:  5'- cCAGCGuuacccaACAGCAGCCcagGCCGACGaggaGGCGc -3'
miRNA:   3'- -GUCGU-------UGUCGUCGG---UGGCUGUg---UCGU- -5'
29795 3' -56 NC_006273.1 + 167182 0.74 0.53774
Target:  5'- aCGGCGggcGCAGCGGCCgcggagGCCGGCguaaACAGCGu -3'
miRNA:   3'- -GUCGU---UGUCGUCGG------UGGCUG----UGUCGU- -5'
29795 3' -56 NC_006273.1 + 71725 0.74 0.547585
Target:  5'- cCAGC-GC-GCAGCC-UCGACACAGCGg -3'
miRNA:   3'- -GUCGuUGuCGUCGGuGGCUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 98693 0.74 0.547585
Target:  5'- -cGCGGCGGCGGCgACCGGC-CGGUc -3'
miRNA:   3'- guCGUUGUCGUCGgUGGCUGuGUCGu -5'
29795 3' -56 NC_006273.1 + 72600 0.74 0.557485
Target:  5'- gCAGCGACAuGCGGCCGCUGcCGCcGCc -3'
miRNA:   3'- -GUCGUUGU-CGUCGGUGGCuGUGuCGu -5'
29795 3' -56 NC_006273.1 + 213902 0.74 0.557486
Target:  5'- cCGGUGGCGGCaugAGCCACCaGCugAGCAc -3'
miRNA:   3'- -GUCGUUGUCG---UCGGUGGcUGugUCGU- -5'
29795 3' -56 NC_006273.1 + 162785 0.74 0.567437
Target:  5'- gCGGCGGCAGCGGCCGCaUGuCGCuGCc -3'
miRNA:   3'- -GUCGUUGUCGUCGGUG-GCuGUGuCGu -5'
29795 3' -56 NC_006273.1 + 22143 0.74 0.567437
Target:  5'- gCGGUAGCGGCGGCgGCCGuCucugaggaagaGCAGCAg -3'
miRNA:   3'- -GUCGUUGUCGUCGgUGGCuG-----------UGUCGU- -5'
29795 3' -56 NC_006273.1 + 8024 0.74 0.567437
Target:  5'- uGGCGGCGGCAgacccaacaugcGCCGaaGACACAGCu -3'
miRNA:   3'- gUCGUUGUCGU------------CGGUggCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 158246 0.74 0.574429
Target:  5'- cCGGCGACGGCGGUUcgccgugguuguugGCCGACGUAGCGc -3'
miRNA:   3'- -GUCGUUGUCGUCGG--------------UGGCUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 102081 0.74 0.577433
Target:  5'- gAGCAGCGGCGGCCAC--ACGCGGg- -3'
miRNA:   3'- gUCGUUGUCGUCGGUGgcUGUGUCgu -5'
29795 3' -56 NC_006273.1 + 147786 0.74 0.581442
Target:  5'- -cGCAACAGCGGCgACgGACggcgucgcaucaucaACAGCAg -3'
miRNA:   3'- guCGUUGUCGUCGgUGgCUG---------------UGUCGU- -5'
29795 3' -56 NC_006273.1 + 22967 0.73 0.587466
Target:  5'- uGGguGCAGCAGUaCGCCGAgaaaCACGGCGg -3'
miRNA:   3'- gUCguUGUCGUCG-GUGGCU----GUGUCGU- -5'
29795 3' -56 NC_006273.1 + 93581 0.73 0.587466
Target:  5'- gAGCGGCGGCGGCCugCGcggccuguacCGCGGCu -3'
miRNA:   3'- gUCGUUGUCGUCGGugGCu---------GUGUCGu -5'
29795 3' -56 NC_006273.1 + 37720 0.73 0.587467
Target:  5'- aAGCAGCuGUcGCCgcguagaaACCGACGCAGCGu -3'
miRNA:   3'- gUCGUUGuCGuCGG--------UGGCUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 116754 0.73 0.587467
Target:  5'- uCAGCGGCAGCuagccGGCCucucgcucuccaGCCGGCGCuGCGa -3'
miRNA:   3'- -GUCGUUGUCG-----UCGG------------UGGCUGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 51592 0.73 0.587467
Target:  5'- uGGCGGCGGCAGCgGggucuucuuCCGACACgGGCGa -3'
miRNA:   3'- gUCGUUGUCGUCGgU---------GGCUGUG-UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.