miRNA display CGI


Results 61 - 80 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 153435 0.73 0.606613
Target:  5'- cCGGC-ACGGCGGgCGCCGGCAagacuucCAGCAu -3'
miRNA:   3'- -GUCGuUGUCGUCgGUGGCUGU-------GUCGU- -5'
29795 3' -56 NC_006273.1 + 147571 0.73 0.607622
Target:  5'- gAGCAGCGGgGGCgGCgGGgGCAGCGg -3'
miRNA:   3'- gUCGUUGUCgUCGgUGgCUgUGUCGU- -5'
29795 3' -56 NC_006273.1 + 161794 0.73 0.607622
Target:  5'- gCGGCAGCGGCAGCgGCgGGC-CAGg- -3'
miRNA:   3'- -GUCGUUGUCGUCGgUGgCUGuGUCgu -5'
29795 3' -56 NC_006273.1 + 203071 0.73 0.607622
Target:  5'- uCAGCAACAGUAuuccCCGCUGuCGCGGCGg -3'
miRNA:   3'- -GUCGUUGUCGUc---GGUGGCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 133249 0.73 0.617731
Target:  5'- uGGCGACGGC-GCCACUGcCGCuGCGa -3'
miRNA:   3'- gUCGUUGUCGuCGGUGGCuGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 231716 0.73 0.62785
Target:  5'- uCGGCGuCGGCAuGCCGCUGAuCGCAGUg -3'
miRNA:   3'- -GUCGUuGUCGU-CGGUGGCU-GUGUCGu -5'
29795 3' -56 NC_006273.1 + 233333 0.73 0.62785
Target:  5'- aCAGCAgaccccACGGCuccuGCCAUCGcGCACGGCGc -3'
miRNA:   3'- -GUCGU------UGUCGu---CGGUGGC-UGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 88139 0.73 0.62785
Target:  5'- uCAGCGAC-GCGGCCAgCGccuCGCAGCc -3'
miRNA:   3'- -GUCGUUGuCGUCGGUgGCu--GUGUCGu -5'
29795 3' -56 NC_006273.1 + 38440 0.73 0.62785
Target:  5'- aCAGCAgaccccACGGCuccuGCCAUCGcGCACGGCGc -3'
miRNA:   3'- -GUCGU------UGUCGu---CGGUGGC-UGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 59497 0.73 0.637973
Target:  5'- aCAGCGACAGCuGcCCAUCGcgACAGCGc -3'
miRNA:   3'- -GUCGUUGUCGuC-GGUGGCugUGUCGU- -5'
29795 3' -56 NC_006273.1 + 152005 0.72 0.64809
Target:  5'- gCGGCGGCAGCAGCCcgaCGugGCccGCGg -3'
miRNA:   3'- -GUCGUUGUCGUCGGug-GCugUGu-CGU- -5'
29795 3' -56 NC_006273.1 + 8271 0.72 0.658195
Target:  5'- gGGCAGCGGCGcauacccacGCCGCCGugGgCGGUg -3'
miRNA:   3'- gUCGUUGUCGU---------CGGUGGCugU-GUCGu -5'
29795 3' -56 NC_006273.1 + 33757 0.72 0.665258
Target:  5'- uGGCGcGCAGCAGCCgaaugauacgcaggGCCaGCACGGCGu -3'
miRNA:   3'- gUCGU-UGUCGUCGG--------------UGGcUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 131860 0.72 0.66828
Target:  5'- cCGGCuACGGCGGCCGCaucgaCGGCAC-GCAc -3'
miRNA:   3'- -GUCGuUGUCGUCGGUG-----GCUGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 116925 0.72 0.677333
Target:  5'- aCAGCGguuuccagaccucACGGCGGCCgACCGugACGGg- -3'
miRNA:   3'- -GUCGU-------------UGUCGUCGG-UGGCugUGUCgu -5'
29795 3' -56 NC_006273.1 + 98212 0.72 0.678336
Target:  5'- gCGGCAGCGGCGGCaCcCCGGCuCAGaCGa -3'
miRNA:   3'- -GUCGUUGUCGUCG-GuGGCUGuGUC-GU- -5'
29795 3' -56 NC_006273.1 + 35012 0.72 0.678337
Target:  5'- gAGCGACGGCGGUaaaGCCaGACAgCGGCu -3'
miRNA:   3'- gUCGUUGUCGUCGg--UGG-CUGU-GUCGu -5'
29795 3' -56 NC_006273.1 + 132359 0.72 0.678337
Target:  5'- aAGCcGCGGCcGCUGCCGcCGCGGCGu -3'
miRNA:   3'- gUCGuUGUCGuCGGUGGCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 80827 0.72 0.688356
Target:  5'- uGGCAACGacGUGGCCGCgGGgCGCAGCGc -3'
miRNA:   3'- gUCGUUGU--CGUCGGUGgCU-GUGUCGU- -5'
29795 3' -56 NC_006273.1 + 194818 0.72 0.688356
Target:  5'- cCGGCAGCGcGCAGaaagCGCCGugGaCAGCAa -3'
miRNA:   3'- -GUCGUUGU-CGUCg---GUGGCugU-GUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.