miRNA display CGI


Results 41 - 60 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 80465 0.66 0.944465
Target:  5'- aGGCGGCGGCGuacuGCCGCUuaaaaccCACGGCGg -3'
miRNA:   3'- gUCGUUGUCGU----CGGUGGcu-----GUGUCGU- -5'
29795 3' -56 NC_006273.1 + 204529 0.66 0.944465
Target:  5'- uCGGCAGCGGaCGGCuCACCuGGCGCcacgggacuGGUAc -3'
miRNA:   3'- -GUCGUUGUC-GUCG-GUGG-CUGUG---------UCGU- -5'
29795 3' -56 NC_006273.1 + 33286 0.66 0.944465
Target:  5'- -uGCGGCGGCAGCgGuuGGCGugguugcuCAGCu -3'
miRNA:   3'- guCGUUGUCGUCGgUggCUGU--------GUCGu -5'
29795 3' -56 NC_006273.1 + 46050 0.66 0.944465
Target:  5'- gGGCucauGCGGguGgccacccacCCGCCGACGCcGCAg -3'
miRNA:   3'- gUCGu---UGUCguC---------GGUGGCUGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 204696 0.66 0.944465
Target:  5'- aCAGgAuCA-UAGCCGCCGGCACcGCGg -3'
miRNA:   3'- -GUCgUuGUcGUCGGUGGCUGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 144999 0.66 0.944022
Target:  5'- cCAGCA-CAGgcugguguaucucCAGUCGUCGGCGCGGCAu -3'
miRNA:   3'- -GUCGUuGUC-------------GUCGGUGGCUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 107681 0.66 0.941773
Target:  5'- -uGCGACuGCGGCCACCacccgacuacgaagaGACGuuGCGa -3'
miRNA:   3'- guCGUUGuCGUCGGUGG---------------CUGUguCGU- -5'
29795 3' -56 NC_006273.1 + 38705 0.66 0.939933
Target:  5'- cCAGCAGCAccaucggcuGCAGUCGCCuuCcCGGCGu -3'
miRNA:   3'- -GUCGUUGU---------CGUCGGUGGcuGuGUCGU- -5'
29795 3' -56 NC_006273.1 + 68782 0.66 0.939933
Target:  5'- aAGCGGCGGCGGCgAU-GGCGgGGCu -3'
miRNA:   3'- gUCGUUGUCGUCGgUGgCUGUgUCGu -5'
29795 3' -56 NC_006273.1 + 34647 0.66 0.939933
Target:  5'- aAGCAcuGCuGCAGCCagACCGGaGCGGUg -3'
miRNA:   3'- gUCGU--UGuCGUCGG--UGGCUgUGUCGu -5'
29795 3' -56 NC_006273.1 + 38161 0.66 0.939933
Target:  5'- -uGCGACAGCu-CCGCCG-C-CAGCGg -3'
miRNA:   3'- guCGUUGUCGucGGUGGCuGuGUCGU- -5'
29795 3' -56 NC_006273.1 + 233597 0.66 0.939933
Target:  5'- cCAGCAGCAccaucggcuGCAGUCGCCuuCcCGGCGu -3'
miRNA:   3'- -GUCGUUGU---------CGUCGGUGGcuGuGUCGU- -5'
29795 3' -56 NC_006273.1 + 36696 0.66 0.939933
Target:  5'- cCAGCAGCgaacguagguAGCGGCCGCgagcggaGGCGCgcgAGCGg -3'
miRNA:   3'- -GUCGUUG----------UCGUCGGUGg------CUGUG---UCGU- -5'
29795 3' -56 NC_006273.1 + 233054 0.66 0.939933
Target:  5'- -uGCGACAGCu-CCGCCG-C-CAGCGg -3'
miRNA:   3'- guCGUUGUCGucGGUGGCuGuGUCGU- -5'
29795 3' -56 NC_006273.1 + 117837 0.66 0.939933
Target:  5'- gAGCGuuacgACGGUGGUCACCGugGuCAGUc -3'
miRNA:   3'- gUCGU-----UGUCGUCGGUGGCugU-GUCGu -5'
29795 3' -56 NC_006273.1 + 151093 0.66 0.939933
Target:  5'- gCAGCcACAGCuuGUCGCCGcGCACcGUAa -3'
miRNA:   3'- -GUCGuUGUCGu-CGGUGGC-UGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 46320 0.66 0.939933
Target:  5'- -cGCAAgaAGCGGCCGCCuACGCcGCc -3'
miRNA:   3'- guCGUUg-UCGUCGGUGGcUGUGuCGu -5'
29795 3' -56 NC_006273.1 + 66436 0.66 0.939933
Target:  5'- gAGC-AC-GCAGCUGCUGACGCGcguGCAc -3'
miRNA:   3'- gUCGuUGuCGUCGGUGGCUGUGU---CGU- -5'
29795 3' -56 NC_006273.1 + 102892 0.66 0.939933
Target:  5'- gGGCGGCGGCGGUaa-C-ACACGGCGa -3'
miRNA:   3'- gUCGUUGUCGUCGgugGcUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 163708 0.66 0.939933
Target:  5'- uCGGCGgccacauuguGCAGCAGgCGCgCGGCgguuuaGCAGCGa -3'
miRNA:   3'- -GUCGU----------UGUCGUCgGUG-GCUG------UGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.