miRNA display CGI


Results 21 - 40 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 20433 0.67 0.906632
Target:  5'- uGGCAGCuguuccgccuacGguGCCACgguugGACACAGCAa -3'
miRNA:   3'- gUCGUUGu-----------CguCGGUGg----CUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 21557 0.69 0.811241
Target:  5'- aCGGCGGC-GCGGCgCAgCGGCugAGCc -3'
miRNA:   3'- -GUCGUUGuCGUCG-GUgGCUGugUCGu -5'
29795 3' -56 NC_006273.1 + 21633 0.67 0.919475
Target:  5'- gGGCAacgagacccACAGCcuGGCgACCGAgacCACGGCGc -3'
miRNA:   3'- gUCGU---------UGUCG--UCGgUGGCU---GUGUCGU- -5'
29795 3' -56 NC_006273.1 + 21913 0.75 0.489542
Target:  5'- gCGGaCAACAacuGCAGCCGCCGGCAUcgGGUAg -3'
miRNA:   3'- -GUC-GUUGU---CGUCGGUGGCUGUG--UCGU- -5'
29795 3' -56 NC_006273.1 + 22143 0.74 0.567437
Target:  5'- gCGGUAGCGGCGGCgGCCGuCucugaggaagaGCAGCAg -3'
miRNA:   3'- -GUCGUUGUCGUCGgUGGCuG-----------UGUCGU- -5'
29795 3' -56 NC_006273.1 + 22263 0.66 0.948768
Target:  5'- gAGCGAC-GCGGCUccGCCGuCGguGCGc -3'
miRNA:   3'- gUCGUUGuCGUCGG--UGGCuGUguCGU- -5'
29795 3' -56 NC_006273.1 + 22296 0.79 0.307244
Target:  5'- -uGCGGCAGCGGUacCCGACGCGGCAg -3'
miRNA:   3'- guCGUUGUCGUCGguGGCUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 22424 0.67 0.913776
Target:  5'- gCAGgGACAGUGcGCCAaCGGCAUAGUg -3'
miRNA:   3'- -GUCgUUGUCGU-CGGUgGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 22967 0.73 0.587466
Target:  5'- uGGguGCAGCAGUaCGCCGAgaaaCACGGCGg -3'
miRNA:   3'- gUCguUGUCGUCG-GUGGCU----GUGUCGU- -5'
29795 3' -56 NC_006273.1 + 27380 0.68 0.867535
Target:  5'- -cGCGuucguCAGCAGCgaCGCCGACAagaccuCAGCAu -3'
miRNA:   3'- guCGUu----GUCGUCG--GUGGCUGU------GUCGU- -5'
29795 3' -56 NC_006273.1 + 30793 0.68 0.850052
Target:  5'- aCAGCAGCAGCGGCgguagcagcagucgCACC-AC-CAGUAa -3'
miRNA:   3'- -GUCGUUGUCGUCG--------------GUGGcUGuGUCGU- -5'
29795 3' -56 NC_006273.1 + 31390 0.66 0.948768
Target:  5'- gCGGCAucGCGGCAcGCCcgaAUCGcCGCGGCu -3'
miRNA:   3'- -GUCGU--UGUCGU-CGG---UGGCuGUGUCGu -5'
29795 3' -56 NC_006273.1 + 31940 0.68 0.888684
Target:  5'- gCGGCAGCAGUAGCUcCCaACGCcucguaGGCGa -3'
miRNA:   3'- -GUCGUUGUCGUCGGuGGcUGUG------UCGU- -5'
29795 3' -56 NC_006273.1 + 32611 0.66 0.939933
Target:  5'- gCAGCAGCGcGCGGCUcacguagcagGCCGACucACGGa- -3'
miRNA:   3'- -GUCGUUGU-CGUCGG----------UGGCUG--UGUCgu -5'
29795 3' -56 NC_006273.1 + 32766 0.68 0.874798
Target:  5'- -uGCGGCAGCgAGUCGgCGGCGC-GCAc -3'
miRNA:   3'- guCGUUGUCG-UCGGUgGCUGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 33286 0.66 0.944465
Target:  5'- -uGCGGCGGCAGCgGuuGGCGugguugcuCAGCu -3'
miRNA:   3'- guCGUUGUCGUCGgUggCUGU--------GUCGu -5'
29795 3' -56 NC_006273.1 + 33336 0.69 0.828232
Target:  5'- gAGCugaacuGCGGCAGCCGCgugCGAUccuGCGGCGc -3'
miRNA:   3'- gUCGu-----UGUCGUCGGUG---GCUG---UGUCGU- -5'
29795 3' -56 NC_006273.1 + 33430 0.75 0.527957
Target:  5'- uCGGCGGCGcGCgacAGCC-CCGGCGCAGCu -3'
miRNA:   3'- -GUCGUUGU-CG---UCGGuGGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 33471 0.67 0.907846
Target:  5'- aGGC-ACAGCAGCUcgcGCUugauGCGCAGCGa -3'
miRNA:   3'- gUCGuUGUCGUCGG---UGGc---UGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 33664 0.66 0.948768
Target:  5'- gCAGCAGC-GCAGCCucGCCuuuaaACAGCc -3'
miRNA:   3'- -GUCGUUGuCGUCGG--UGGcug--UGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.