miRNA display CGI


Results 41 - 60 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 33757 0.72 0.665258
Target:  5'- uGGCGcGCAGCAGCCgaaugauacgcaggGCCaGCACGGCGu -3'
miRNA:   3'- gUCGU-UGUCGUCGG--------------UGGcUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 34228 0.76 0.452484
Target:  5'- gGGCAacccGCGGCacagGGCCGCCGGCagGCAGCGg -3'
miRNA:   3'- gUCGU----UGUCG----UCGGUGGCUG--UGUCGU- -5'
29795 3' -56 NC_006273.1 + 34320 0.67 0.907846
Target:  5'- gCAGguACAGCuccucGGUCAUCGAgCAUAGCu -3'
miRNA:   3'- -GUCguUGUCG-----UCGGUGGCU-GUGUCGu -5'
29795 3' -56 NC_006273.1 + 34647 0.66 0.939933
Target:  5'- aAGCAcuGCuGCAGCCagACCGGaGCGGUg -3'
miRNA:   3'- gUCGU--UGuCGUCGG--UGGCUgUGUCGu -5'
29795 3' -56 NC_006273.1 + 35012 0.72 0.678337
Target:  5'- gAGCGACGGCGGUaaaGCCaGACAgCGGCu -3'
miRNA:   3'- gUCGUUGUCGUCGg--UGG-CUGU-GUCGu -5'
29795 3' -56 NC_006273.1 + 35145 0.67 0.907846
Target:  5'- gGGCGAUguauGGCuGCuCACCGGuuuCGCGGCAa -3'
miRNA:   3'- gUCGUUG----UCGuCG-GUGGCU---GUGUCGU- -5'
29795 3' -56 NC_006273.1 + 35797 0.66 0.930171
Target:  5'- aAGUAcaAGCGGCCAgcCUGGCGCAGgCAc -3'
miRNA:   3'- gUCGUugUCGUCGGU--GGCUGUGUC-GU- -5'
29795 3' -56 NC_006273.1 + 35882 0.79 0.314302
Target:  5'- cCAGCAugaugccguGCAGCGGCgGCCaGCACAGCGg -3'
miRNA:   3'- -GUCGU---------UGUCGUCGgUGGcUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 36696 0.66 0.939933
Target:  5'- cCAGCAGCgaacguagguAGCGGCCGCgagcggaGGCGCgcgAGCGg -3'
miRNA:   3'- -GUCGUUG----------UCGUCGGUGg------CUGUG---UCGU- -5'
29795 3' -56 NC_006273.1 + 37192 0.66 0.92494
Target:  5'- uCGGguACcaAGCAGCguUugCGACGCGGCc -3'
miRNA:   3'- -GUCguUG--UCGUCG--GugGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 37720 0.73 0.587467
Target:  5'- aAGCAGCuGUcGCCgcguagaaACCGACGCAGCGu -3'
miRNA:   3'- gUCGUUGuCGuCGG--------UGGCUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 38069 0.83 0.172752
Target:  5'- cCAGCucggGCAGCAGCCGCCG-CGCGGCc -3'
miRNA:   3'- -GUCGu---UGUCGUCGGUGGCuGUGUCGu -5'
29795 3' -56 NC_006273.1 + 38161 0.66 0.939933
Target:  5'- -uGCGACAGCu-CCGCCG-C-CAGCGg -3'
miRNA:   3'- guCGUUGUCGucGGUGGCuGuGUCGU- -5'
29795 3' -56 NC_006273.1 + 38440 0.73 0.62785
Target:  5'- aCAGCAgaccccACGGCuccuGCCAUCGcGCACGGCGc -3'
miRNA:   3'- -GUCGU------UGUCGu---CGGUGGC-UGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 38552 0.7 0.802503
Target:  5'- -cGCAACc-CAGCCACCGcGCggGCAGCAc -3'
miRNA:   3'- guCGUUGucGUCGGUGGC-UG--UGUCGU- -5'
29795 3' -56 NC_006273.1 + 38585 0.67 0.901685
Target:  5'- cCAGCGcCAGcCAGCCGCa-GCACAGaCGc -3'
miRNA:   3'- -GUCGUuGUC-GUCGGUGgcUGUGUC-GU- -5'
29795 3' -56 NC_006273.1 + 38642 0.66 0.92494
Target:  5'- gCAGCGACgcgGGguGCggCGCCGACGCgaacGGCu -3'
miRNA:   3'- -GUCGUUG---UCguCG--GUGGCUGUG----UCGu -5'
29795 3' -56 NC_006273.1 + 38705 0.66 0.939933
Target:  5'- cCAGCAGCAccaucggcuGCAGUCGCCuuCcCGGCGu -3'
miRNA:   3'- -GUCGUUGU---------CGUCGGUGGcuGuGUCGU- -5'
29795 3' -56 NC_006273.1 + 38757 0.66 0.948768
Target:  5'- -cGUGcCGGCccaCCGCCGGCGCAGCu -3'
miRNA:   3'- guCGUuGUCGuc-GGUGGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 38813 0.68 0.867534
Target:  5'- gCAGCAACgucugucggAGC-GCCgGCUGAgGCAGCAg -3'
miRNA:   3'- -GUCGUUG---------UCGuCGG-UGGCUgUGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.