miRNA display CGI


Results 61 - 80 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 39218 0.67 0.895297
Target:  5'- gAGCGGCAGCAGCgugcCCGcgucGCGCuGCGa -3'
miRNA:   3'- gUCGUUGUCGUCGgu--GGC----UGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 39845 0.66 0.946214
Target:  5'- -cGCGGCGGCgAGCCGCUcaaagucacgcugugGACGC-GCAc -3'
miRNA:   3'- guCGUUGUCG-UCGGUGG---------------CUGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 39880 0.69 0.819819
Target:  5'- -cGCAACAG-GGCCGCgGACugGGUc -3'
miRNA:   3'- guCGUUGUCgUCGGUGgCUGugUCGu -5'
29795 3' -56 NC_006273.1 + 40075 0.69 0.819819
Target:  5'- aAGCGACGuGCGGCgCGCaCGGCGaaaAGCAg -3'
miRNA:   3'- gUCGUUGU-CGUCG-GUG-GCUGUg--UCGU- -5'
29795 3' -56 NC_006273.1 + 41512 0.69 0.81982
Target:  5'- uCGGCGugaggAUGGCAG-CGCCGGCGcCAGCAg -3'
miRNA:   3'- -GUCGU-----UGUCGUCgGUGGCUGU-GUCGU- -5'
29795 3' -56 NC_006273.1 + 42067 0.67 0.919475
Target:  5'- gGGCGGCGGUuGCUGCUGACguuGCuGCAg -3'
miRNA:   3'- gUCGUUGUCGuCGGUGGCUG---UGuCGU- -5'
29795 3' -56 NC_006273.1 + 42154 0.69 0.836469
Target:  5'- aCGGCAGCAuuaacGCcGCCGCCG-C-CAGCGg -3'
miRNA:   3'- -GUCGUUGU-----CGuCGGUGGCuGuGUCGU- -5'
29795 3' -56 NC_006273.1 + 42198 0.71 0.718105
Target:  5'- -cGUAAUAGCcgacGGCCGCCGAacggGCAGCGu -3'
miRNA:   3'- guCGUUGUCG----UCGGUGGCUg---UGUCGU- -5'
29795 3' -56 NC_006273.1 + 42498 0.68 0.881849
Target:  5'- cCAGCAGCgugucGGCcgAGUCGCCGuuuucCACGGCGu -3'
miRNA:   3'- -GUCGUUG-----UCG--UCGGUGGCu----GUGUCGU- -5'
29795 3' -56 NC_006273.1 + 42668 0.69 0.834017
Target:  5'- -cGCAGCAGCAGCCagaggaaccaaaagGCCaacagaucugGGCGCAGaCAg -3'
miRNA:   3'- guCGUUGUCGUCGG--------------UGG----------CUGUGUC-GU- -5'
29795 3' -56 NC_006273.1 + 43221 0.66 0.92494
Target:  5'- -cGCGAuCGGCAGgCggGCCGGCuACGGCGc -3'
miRNA:   3'- guCGUU-GUCGUCgG--UGGCUG-UGUCGU- -5'
29795 3' -56 NC_006273.1 + 43956 0.69 0.823205
Target:  5'- -cGCAACAGCAGCgcccaggcgaucucgCGCuCGACgACGGCu -3'
miRNA:   3'- guCGUUGUCGUCG---------------GUG-GCUG-UGUCGu -5'
29795 3' -56 NC_006273.1 + 45893 0.67 0.901685
Target:  5'- -cGCGGCGGCcgGGCCGCCGAgGCc--- -3'
miRNA:   3'- guCGUUGUCG--UCGGUGGCUgUGucgu -5'
29795 3' -56 NC_006273.1 + 46050 0.66 0.944465
Target:  5'- gGGCucauGCGGguGgccacccacCCGCCGACGCcGCAg -3'
miRNA:   3'- gUCGu---UGUCguC---------GGUGGCUGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 46143 0.71 0.747206
Target:  5'- aCGGCAACGGUGGCgaacgCugCGACACgcuAGCGa -3'
miRNA:   3'- -GUCGUUGUCGUCG-----GugGCUGUG---UCGU- -5'
29795 3' -56 NC_006273.1 + 46320 0.66 0.939933
Target:  5'- -cGCAAgaAGCGGCCGCCuACGCcGCc -3'
miRNA:   3'- guCGUUg-UCGUCGGUGGcUGUGuCGu -5'
29795 3' -56 NC_006273.1 + 46682 0.66 0.923325
Target:  5'- -cGCAACAGCcgcgacguauugcgGGaCCugCGcACGCAGCu -3'
miRNA:   3'- guCGUUGUCG--------------UC-GGugGC-UGUGUCGu -5'
29795 3' -56 NC_006273.1 + 47289 0.76 0.425718
Target:  5'- aCGGCAGCGGCuGUCGCuuCGACACGGUg -3'
miRNA:   3'- -GUCGUUGUCGuCGGUG--GCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 47295 0.67 0.895297
Target:  5'- gCGGCAacACAGCAGUCcggccuuccaGCCGAUGCuGUAc -3'
miRNA:   3'- -GUCGU--UGUCGUCGG----------UGGCUGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 48019 0.66 0.92494
Target:  5'- cCAGagaAACAGCGuGCCuccGCCGgACAUGGCGg -3'
miRNA:   3'- -GUCg--UUGUCGU-CGG---UGGC-UGUGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.