miRNA display CGI


Results 1 - 20 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 234968 0.69 0.81982
Target:  5'- aAGCGACGuGCGGCgCGCaCGGCGaaaAGCAg -3'
miRNA:   3'- gUCGUUGU-CGUCG-GUG-GCUGUg--UCGU- -5'
29795 3' -56 NC_006273.1 + 234772 0.69 0.81982
Target:  5'- -cGCAACAG-GGCCGCgGACugGGUc -3'
miRNA:   3'- guCGUUGUCgUCGGUGgCUGugUCGu -5'
29795 3' -56 NC_006273.1 + 234756 0.72 0.688356
Target:  5'- cCGGCAGCGcGCAGaaagCGCCGugGaCAGCAa -3'
miRNA:   3'- -GUCGUUGU-CGUCg---GUGGCugU-GUCGU- -5'
29795 3' -56 NC_006273.1 + 234609 0.78 0.375139
Target:  5'- -cGCAACGGCAGUgcgcacaaagCGCCgGACACAGCAc -3'
miRNA:   3'- guCGUUGUCGUCG----------GUGG-CUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 234111 0.67 0.895297
Target:  5'- gAGCGGCAGCAGCgugcCCGcgucGCGCuGCGa -3'
miRNA:   3'- gUCGUUGUCGUCGgu--GGC----UGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 233705 0.68 0.867535
Target:  5'- gCAGCAACgucugucggAGC-GCCgGCUGAgGCAGCAg -3'
miRNA:   3'- -GUCGUUG---------UCGuCGG-UGGCUgUGUCGU- -5'
29795 3' -56 NC_006273.1 + 233669 0.71 0.718104
Target:  5'- uCGGCc-CAGUcGCCACCGcCGCGGCGg -3'
miRNA:   3'- -GUCGuuGUCGuCGGUGGCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 233649 0.66 0.948768
Target:  5'- -cGUGcCGGCccaCCGCCGGCGCAGCu -3'
miRNA:   3'- guCGUuGUCGuc-GGUGGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 233597 0.66 0.939933
Target:  5'- cCAGCAGCAccaucggcuGCAGUCGCCuuCcCGGCGu -3'
miRNA:   3'- -GUCGUUGU---------CGUCGGUGGcuGuGUCGU- -5'
29795 3' -56 NC_006273.1 + 233534 0.66 0.92494
Target:  5'- gCAGCGACgcgGGguGCggCGCCGACGCgaacGGCu -3'
miRNA:   3'- -GUCGUUG---UCguCG--GUGGCUGUG----UCGu -5'
29795 3' -56 NC_006273.1 + 233478 0.67 0.901685
Target:  5'- cCAGCGcCAGcCAGCCGCa-GCACAGaCGc -3'
miRNA:   3'- -GUCGUuGUC-GUCGGUGgcUGUGUC-GU- -5'
29795 3' -56 NC_006273.1 + 233445 0.7 0.802503
Target:  5'- -cGCAACc-CAGCCACCGcGCggGCAGCAc -3'
miRNA:   3'- guCGUUGucGUCGGUGGC-UG--UGUCGU- -5'
29795 3' -56 NC_006273.1 + 233333 0.73 0.62785
Target:  5'- aCAGCAgaccccACGGCuccuGCCAUCGcGCACGGCGc -3'
miRNA:   3'- -GUCGU------UGUCGu---CGGUGGC-UGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 233054 0.66 0.939933
Target:  5'- -uGCGACAGCu-CCGCCG-C-CAGCGg -3'
miRNA:   3'- guCGUUGUCGucGGUGGCuGuGUCGU- -5'
29795 3' -56 NC_006273.1 + 232962 0.83 0.172753
Target:  5'- cCAGCucggGCAGCAGCCGCCG-CGCGGCc -3'
miRNA:   3'- -GUCGu---UGUCGUCGGUGGCuGUGUCGu -5'
29795 3' -56 NC_006273.1 + 231716 0.73 0.62785
Target:  5'- uCGGCGuCGGCAuGCCGCUGAuCGCAGUg -3'
miRNA:   3'- -GUCGUuGUCGU-CGGUGGCU-GUGUCGu -5'
29795 3' -56 NC_006273.1 + 230159 0.66 0.948768
Target:  5'- aAGC-AUAGuCAGCCGaauGAUACAGCAa -3'
miRNA:   3'- gUCGuUGUC-GUCGGUgg-CUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 222157 0.66 0.948768
Target:  5'- aGGCGAgAGCucauGCCGCaccaGACGCuGUAa -3'
miRNA:   3'- gUCGUUgUCGu---CGGUGg---CUGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 221798 0.69 0.811241
Target:  5'- cCAGC-ACGGCGGCCcggGCCGcC-CGGCGg -3'
miRNA:   3'- -GUCGuUGUCGUCGG---UGGCuGuGUCGU- -5'
29795 3' -56 NC_006273.1 + 221288 0.69 0.836469
Target:  5'- aCAGcCGGCGGUccgAGCCACUGAgcgguuCACAGCc -3'
miRNA:   3'- -GUC-GUUGUCG---UCGGUGGCU------GUGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.