miRNA display CGI


Results 21 - 40 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 218195 0.76 0.434536
Target:  5'- uGGCAugGGCGGCgGCCGACGgcggacgacCGGCAu -3'
miRNA:   3'- gUCGUugUCGUCGgUGGCUGU---------GUCGU- -5'
29795 3' -56 NC_006273.1 + 217989 0.68 0.867535
Target:  5'- uGGC--CGGCGGCCAUacGCGCGGCAa -3'
miRNA:   3'- gUCGuuGUCGUCGGUGgcUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 216547 0.68 0.881849
Target:  5'- uCAGCGuguggugacagACGGCAGCUccuccaACCGACACucgccgcGCAa -3'
miRNA:   3'- -GUCGU-----------UGUCGUCGG------UGGCUGUGu------CGU- -5'
29795 3' -56 NC_006273.1 + 215582 0.67 0.907846
Target:  5'- gCGGCAACAcCAGCCAgCaaaaGGCGCAGaCGc -3'
miRNA:   3'- -GUCGUUGUcGUCGGU-Gg---CUGUGUC-GU- -5'
29795 3' -56 NC_006273.1 + 215400 0.69 0.836469
Target:  5'- -cGCGACGGCAGUUcgGgUGAUACGGCGu -3'
miRNA:   3'- guCGUUGUCGUCGG--UgGCUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 214990 0.75 0.48014
Target:  5'- gGGCGACgccgcugcuguGGCAGCgACCGuCGCAGCGa -3'
miRNA:   3'- gUCGUUG-----------UCGUCGgUGGCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 214161 0.84 0.168483
Target:  5'- uCAGCAGCGGCAGCCACagCGGCgGCAGCc -3'
miRNA:   3'- -GUCGUUGUCGUCGGUG--GCUG-UGUCGu -5'
29795 3' -56 NC_006273.1 + 213902 0.74 0.557486
Target:  5'- cCGGUGGCGGCaugAGCCACCaGCugAGCAc -3'
miRNA:   3'- -GUCGUUGUCG---UCGGUGGcUGugUCGU- -5'
29795 3' -56 NC_006273.1 + 213533 0.68 0.852392
Target:  5'- gCGGCccGCAGCAGCCaaagucccagcGCCGuaGCGCAGaCAg -3'
miRNA:   3'- -GUCGu-UGUCGUCGG-----------UGGC--UGUGUC-GU- -5'
29795 3' -56 NC_006273.1 + 213474 0.69 0.844525
Target:  5'- uUAGCAuCAGC-GUCACCGucaACAGCGu -3'
miRNA:   3'- -GUCGUuGUCGuCGGUGGCug-UGUCGU- -5'
29795 3' -56 NC_006273.1 + 213363 0.67 0.913776
Target:  5'- uGGCAGagggaGGUcagGGCCACCGAuccCGCGGCc -3'
miRNA:   3'- gUCGUUg----UCG---UCGGUGGCU---GUGUCGu -5'
29795 3' -56 NC_006273.1 + 213243 0.66 0.935168
Target:  5'- uCAGaGACGGCcGCCGCCGcUACcGCAg -3'
miRNA:   3'- -GUCgUUGUCGuCGGUGGCuGUGuCGU- -5'
29795 3' -56 NC_006273.1 + 212025 0.79 0.307243
Target:  5'- aGGCGAaugcGCAGCCGCUGACACAGUc -3'
miRNA:   3'- gUCGUUgu--CGUCGGUGGCUGUGUCGu -5'
29795 3' -56 NC_006273.1 + 211946 0.66 0.935168
Target:  5'- aAGguGCAGguGCC-CUG-CACGGCc -3'
miRNA:   3'- gUCguUGUCguCGGuGGCuGUGUCGu -5'
29795 3' -56 NC_006273.1 + 209954 0.66 0.948768
Target:  5'- aCGGCGccauagguguGCAGC-GCCACgCGGCAaCAGUc -3'
miRNA:   3'- -GUCGU----------UGUCGuCGGUG-GCUGU-GUCGu -5'
29795 3' -56 NC_006273.1 + 208947 0.7 0.784583
Target:  5'- aAGCAAUAGCGGCgagggAUCGuCGCGGCAc -3'
miRNA:   3'- gUCGUUGUCGUCGg----UGGCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 208240 0.68 0.867535
Target:  5'- gUAGCGACGGCAGCgGCgGGucCAUgaGGCGg -3'
miRNA:   3'- -GUCGUUGUCGUCGgUGgCU--GUG--UCGU- -5'
29795 3' -56 NC_006273.1 + 208173 0.66 0.939933
Target:  5'- aCAGCAaaACGgcGCAGCCACauaaGGCcgugguGCAGCu -3'
miRNA:   3'- -GUCGU--UGU--CGUCGGUGg---CUG------UGUCGu -5'
29795 3' -56 NC_006273.1 + 204790 0.66 0.948348
Target:  5'- uGGCGGCGccGguGCCGCCGgucucgcGCACgAGCu -3'
miRNA:   3'- gUCGUUGU--CguCGGUGGC-------UGUG-UCGu -5'
29795 3' -56 NC_006273.1 + 204696 0.66 0.944465
Target:  5'- aCAGgAuCA-UAGCCGCCGGCACcGCGg -3'
miRNA:   3'- -GUCgUuGUcGUCGGUGGCUGUGuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.