miRNA display CGI


Results 41 - 60 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29795 3' -56 NC_006273.1 + 204529 0.66 0.944465
Target:  5'- uCGGCAGCGGaCGGCuCACCuGGCGCcacgggacuGGUAc -3'
miRNA:   3'- -GUCGUUGUC-GUCG-GUGG-CUGUG---------UCGU- -5'
29795 3' -56 NC_006273.1 + 204184 0.76 0.434536
Target:  5'- gCGGCAACcagGGCAGCCuggacGCCGGC-CGGCAa -3'
miRNA:   3'- -GUCGUUG---UCGUCGG-----UGGCUGuGUCGU- -5'
29795 3' -56 NC_006273.1 + 203894 0.74 0.536759
Target:  5'- cCAGCGuuacccaACAGCAGCCcagGCCGACGaggaGGCGc -3'
miRNA:   3'- -GUCGU-------UGUCGUCGG---UGGCUGUg---UCGU- -5'
29795 3' -56 NC_006273.1 + 203071 0.73 0.607622
Target:  5'- uCAGCAACAGUAuuccCCGCUGuCGCGGCGg -3'
miRNA:   3'- -GUCGUUGUCGUc---GGUGGCuGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 202717 0.69 0.819819
Target:  5'- aCGGCAACcGCucgGGCCugCGACGCGacGCc -3'
miRNA:   3'- -GUCGUUGuCG---UCGGugGCUGUGU--CGu -5'
29795 3' -56 NC_006273.1 + 202553 0.7 0.766127
Target:  5'- gCAGCGuggcCGGCguGGCgGCCGACGgCAGCGu -3'
miRNA:   3'- -GUCGUu---GUCG--UCGgUGGCUGU-GUCGU- -5'
29795 3' -56 NC_006273.1 + 201962 0.66 0.935168
Target:  5'- gGGCugUcGCGcGCCGCCGACGCccgaGGCGg -3'
miRNA:   3'- gUCGuuGuCGU-CGGUGGCUGUG----UCGU- -5'
29795 3' -56 NC_006273.1 + 199488 0.68 0.874798
Target:  5'- uGGCucccGCuguGCuGGCCGCCGcuGCACGGCAu -3'
miRNA:   3'- gUCGu---UGu--CG-UCGGUGGC--UGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 198971 0.7 0.784583
Target:  5'- gCGGCGACA-CGGgCACCGuguACGCGGCGc -3'
miRNA:   3'- -GUCGUUGUcGUCgGUGGC---UGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 198073 0.67 0.895297
Target:  5'- aAGCAACGGCAcgguuCCACCGACGgaaaAGUu -3'
miRNA:   3'- gUCGUUGUCGUc----GGUGGCUGUg---UCGu -5'
29795 3' -56 NC_006273.1 + 197972 0.69 0.844525
Target:  5'- aAGUAGCGGCGcGCC-CCGGCGCucagucGCGg -3'
miRNA:   3'- gUCGUUGUCGU-CGGuGGCUGUGu-----CGU- -5'
29795 3' -56 NC_006273.1 + 197350 0.66 0.948768
Target:  5'- gCAGUGGgAGCGGCCGCgcuggGACGCGcuGCAc -3'
miRNA:   3'- -GUCGUUgUCGUCGGUGg----CUGUGU--CGU- -5'
29795 3' -56 NC_006273.1 + 197288 0.67 0.913776
Target:  5'- gGGCGcgaguCGGCGcccGCCGCCGaggccGCGCGGCGg -3'
miRNA:   3'- gUCGUu----GUCGU---CGGUGGC-----UGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 197075 0.76 0.434536
Target:  5'- gCGGCAGCAGCGGCggCGCCGACGguGa- -3'
miRNA:   3'- -GUCGUUGUCGUCG--GUGGCUGUguCgu -5'
29795 3' -56 NC_006273.1 + 197045 0.78 0.364729
Target:  5'- gAGCGGCAGCGGCgACgacgguggcggcgaCGACACGGCGa -3'
miRNA:   3'- gUCGUUGUCGUCGgUG--------------GCUGUGUCGU- -5'
29795 3' -56 NC_006273.1 + 197018 0.66 0.930171
Target:  5'- nGGUAACAGCAGCU-CCGugA-AGCu -3'
miRNA:   3'- gUCGUUGUCGUCGGuGGCugUgUCGu -5'
29795 3' -56 NC_006273.1 + 196994 0.76 0.470827
Target:  5'- -cGCAGCGGCGGCgACgGACgGCGGCGg -3'
miRNA:   3'- guCGUUGUCGUCGgUGgCUG-UGUCGU- -5'
29795 3' -56 NC_006273.1 + 196892 0.68 0.850052
Target:  5'- cCAGCGGCgAGCggcacggagacggaGGCCGCCGGCGgGGaCGc -3'
miRNA:   3'- -GUCGUUG-UCG--------------UCGGUGGCUGUgUC-GU- -5'
29795 3' -56 NC_006273.1 + 196679 0.67 0.913776
Target:  5'- aGGCGACuGCAGCCgaugguGCUG-CugGGCGc -3'
miRNA:   3'- gUCGUUGuCGUCGG------UGGCuGugUCGU- -5'
29795 3' -56 NC_006273.1 + 196506 0.66 0.935168
Target:  5'- gAGguGguGCGGCUguaccgcugcaACCGGCugGGCGu -3'
miRNA:   3'- gUCguUguCGUCGG-----------UGGCUGugUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.